EST details — SGN-E392551

Search information 
Request: 392551Match: SGN-E392551
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180884Clone name: TUS-35-I10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180884 is on microarray TOM1 spot ID 1-1-7.1.17.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64565 [cLEM-6-I13] Trace: SGN-T84558 EST: SGN-E270802 Direction: 5' Facility: TIGR
Clone: SGN-C180884 [TUS-35-I10] Trace: SGN-T193636 EST: SGN-E392310 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392551Length: 696 bp (865 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392551 [] (trimmed) ACCTAATTAATATCATCAAGTTTCTTTTCTAGACGACTGAGCATTTAGGACCTTAGACTGGTCTCGTATAAGTTCACCGCGATTCATAATAGCAA
ACAGTAGTCTGAAGGATGCAAAACTAGCAGTTCCAAGTTCCGAAGTTGCATTACCCTAACCTAAAAGTAGACTAAAGGAATAACAACTAGAACGT
TTGTCGTCTCCACCTGCAGATCGGTCATTCTTCTCTCGTCCCTGCAAATGCCTGTGAAATCAAACCTGTTGGTATATATCCTCTGATTTGGCTCC
ACAACCTGGATGAGCTCTGGTCATAAGAAACCTGACTGCACAAGCGAGCACACAATGCATTTGCAAAAGATTATACCAGTAAACGTCATGCAAGT
CTCTTATTACAAAGCCCTTAAAATGCAAGACCTAAACCTAGATCCCGAAAAAGGACATTTCAGCCTGGATAACCTAGAAGAACAAATGGATGACC
AAGAAATGTTATGACAAGCTAAGTTTATTATCACTTTTTATAATCCAATCCTAGCTGAACAATTATGGAATAGTTAATGCAGTGGACAACCCTGT
AACAGAAACGTTACACGACAGTGCTTTTTGGGAAGGCAACACTGCATGAGATGAGTTTATTATTACTTTTTTACATGATCCAATCCTACCTGACA
ATTATGGAAAAGTTTATATGCAGTGGGAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392551] SGN-U577622 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193877 [Download][View] Facility Assigned ID: FA0AAD23BE05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0163 Quality Trim Threshold: 14.5