EST details — SGN-E392754

Search information 
Request: 392754Match: SGN-E392754
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181110Clone name: TUS-36-B20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181110 is on microarray TOM1 spot ID 1-1-5.2.14.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C18139 [cLED-22-C22] Trace: SGN-T54155 EST: SGN-E238089 Direction: 5' Facility: TIGR
Clone: SGN-C181110 [TUS-36-B20] Trace: SGN-T194184 EST: SGN-E392858 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E392754Length: 665 bp (826 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E392754 [] (trimmed) GATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGG
AGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGA
CTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAG
ATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAA
GCAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGTGG
AGAAGGGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAAATACGTTCATATGTATATTTTGGG
TCCCAATTTAGTGCATTTGTTTCTGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTNGACTGGTCTTATAAAAACGACCAGAAACCTGTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392754] SGN-U572767 Tomato 200607 Build 2 26 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194080 [Download][View] Facility Assigned ID: FA0AAD24DA10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0078 Quality Trim Threshold: 14.5