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EST details — SGN-E392861

Search information 
Request: 392861Match: SGN-E392861
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181142Clone name: TUS-36-D4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181142 is on microarray TOM1 spot ID 1-1-5.4.15.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C18201 [cLED-22-G4] Trace: SGN-T54163 EST: SGN-E238097 Direction: 5' Facility: TIGR
Clone: SGN-C181142 [TUS-36-D4] Trace: SGN-T194083 EST: SGN-E392757 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E392861Length: 514 bp (839 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392861 [] (trimmed) TTTAGGAAATTACATACATTACGCCATTGTATTACATATTTTGTTTCAAAGTGACCTCCTAAGAAGCAAATGCCATAACCACACAGATTCAGAGA
ATGTCTGAAAGAATTTTTACGAAATAAAAGTAATTGGAACTAGATAAAAACCCGCCTGCATCCAGGATGAATCCGCAACAACTCTATTTCAACTT
AGGCCTTATTGGCGATGTTGTTAGAAAGCCGATCAAGACCCTCATAGAGTCCCTCTCCAGAAGTTGCACAAGTGCTTTGGATGTACCAGTGACGC
TGCCTGAGGGAGTGGAGTCCAAGCTTGTCGGTTATTTCAGCAGCATTCTTTGTTTTAGGAAGATCTTGTTTGTTAGCATAATCAAGCAACACAGC
ATCCCGAAGCTCATCCTCATTCAACATCCTGTGCAATTCATCTCTTGCCTCCCCTACACGGTCTCTGTCGTTGCTATCGACCACAAAAATGAGAC
CCTGAGTGTTCTGGAAATAGTGCCTCCACAATGGACGGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392861] SGN-U577562 Tomato 200607 Build 2 111 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194187 [Download][View] Facility Assigned ID: FA0AAD24DB02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.964 Expected Error Rate: 0.0222 Quality Trim Threshold: 14.5