EST details — SGN-E393183
Search information |
Request: 393183 | Match: SGN-E393183 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C181885 | Clone name: TUS-38-C3 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181885 is on microarray TOM1 spot ID 1-1-6.3.10.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C3138 [cLEC-19-L4] | Trace: SGN-T27470 | EST: SGN-E202629 | Direction: 5' | Facility: TIGR |
Clone: SGN-C181885 [TUS-38-C3] | Trace: SGN-T194510 | EST: SGN-E393184 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E393183 | Length: 684 bp (836 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393183 [] (trimmed)
AAAAAAAAAAAAACTCATAAGCCCTAGGTGTTAATATAATGATAATAACTTTAAATTACTACCTTAAAACATCATTTTCAACATAACGAGTCCTT
CCTAAAGAGTCGGATCTTTAGATGTAACTATTTTCTCAAAGAGTTTAAGTTATATACACCGTTATTATAAACTTTTCTCAAATAGGACCAACCTA
TTATCAGCTAGTCTAGTCTTGTAAGCTGACTTTTTGTACTCAAACCATGTAAACTCTTTGTATAAACTGTCTTTTCCTTCCATTAGTGATGGCAA
TGGTGCTATCTTTTCACTCAATGGTGGTCCTCCAAAATATATCATTGATAGTCTTGATTTCACACTGTTTGTCAACACCCTATGTTTCACACTCT
TAAACCTTCCATTCGTCATCACCTGTAATGAGTCTCCAACATTGACGAAAAAAGAATTCTGATCAGATGGAACAGAAAACCAGTTGCCATTTTTG
AGTAAAATTTGAAGACCGGAAGTGTTGTTGGATCTTAAAATCGACATGATTTGTGGATCAGTATGTTCTCCAAATCCAATTAAATTTTTGGCATT
GAATTCTTGAATATCAGGACATGGAGGATAGTGATTCACCCCTGAAAACAAAGTCGCTCTTTTCATCCATCAATAACTTACTCAAAACATTCGTC
CGGTTGAATCTTTAATCCC
CCTAAAGAGTCGGATCTTTAGATGTAACTATTTTCTCAAAGAGTTTAAGTTATATACACCGTTATTATAAACTTTTCTCAAATAGGACCAACCTA
TTATCAGCTAGTCTAGTCTTGTAAGCTGACTTTTTGTACTCAAACCATGTAAACTCTTTGTATAAACTGTCTTTTCCTTCCATTAGTGATGGCAA
TGGTGCTATCTTTTCACTCAATGGTGGTCCTCCAAAATATATCATTGATAGTCTTGATTTCACACTGTTTGTCAACACCCTATGTTTCACACTCT
TAAACCTTCCATTCGTCATCACCTGTAATGAGTCTCCAACATTGACGAAAAAAGAATTCTGATCAGATGGAACAGAAAACCAGTTGCCATTTTTG
AGTAAAATTTGAAGACCGGAAGTGTTGTTGGATCTTAAAATCGACATGATTTGTGGATCAGTATGTTCTCCAAATCCAATTAAATTTTTGGCATT
GAATTCTTGAATATCAGGACATGGAGGATAGTGATTCACCCCTGAAAACAAAGTCGCTCTTTTCATCCATCAATAACTTACTCAAAACATTCGTC
CGGTTGAATCTTTAATCCC
Unigenes |
Current Unigene builds | |||||
[SGN-E393183] | SGN-U578575 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T194509 [Download][View] | Facility Assigned ID: FA0AAD26AB02FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.938 | Expected Error Rate: 0.0058 | Quality Trim Threshold: 14.5 |