EST details — SGN-E393258
Search information |
Request: 393258 | Match: SGN-E393258 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C181990 | Clone name: TUS-38-G12 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181990 is on microarray TOM1 spot ID 1-1-5.3.10.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C7120 [cLEC-37-N4] | Trace: SGN-T31290 | EST: SGN-E208299 | Direction: 5' | Facility: TIGR |
Clone: SGN-C181990 [TUS-38-G12] | Trace: SGN-T194798 | EST: SGN-E393472 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E393258 | Length: 605 bp (892 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393258 [] (trimmed)
GTTAAATAGAAGTAACAGCTGCTGACATTGCCTTTTGAGTTCTCTACTAAAAGCAATAATGGCGGCTGCAAGTGCAACAGTGAGGGTATCAGCAA
ACAACACTATAACAGCTTCACTAATATCGAAAAGTCCTCTCCAAAAGCCCAGCATTTTCCACCTATGCTTCCGTAATGGAGCTGCTGCTGCACAA
AGGAATCGACTTTTCAGTTGCAGTGCTATTTACAATCCCCAAATTCAAATCAAACAACACGGACAGCCTGAAACGTTGGATTATCGTGTATTTTT
TGCGGAAGATTCCGGCAAAAAGGTATCCCCTTGGCATGATATACCACTTAACTTAGGTGATGGTGTTTTCAATTTCATTGCTGAAATTCCCAAAG
AATCAAGTGCAAAGATGGAAGTTGCTACTGATGAGCAGTACACCCCAATTAAACAAGACACAAAGAAGGGAAAACTTAGATACTATCCATATAAC
ATTAACTGGAACTATGGATTGCTTCCTCAAACCTGGGAAGACCCTTCATTGGCAAATGCTGAAGTTGAGGGGGCATTTGGAGATAATGACCCTGT
TGATGTTGTCGAAATTGGGGAAAAGTCCTGCTAAA
ACAACACTATAACAGCTTCACTAATATCGAAAAGTCCTCTCCAAAAGCCCAGCATTTTCCACCTATGCTTCCGTAATGGAGCTGCTGCTGCACAA
AGGAATCGACTTTTCAGTTGCAGTGCTATTTACAATCCCCAAATTCAAATCAAACAACACGGACAGCCTGAAACGTTGGATTATCGTGTATTTTT
TGCGGAAGATTCCGGCAAAAAGGTATCCCCTTGGCATGATATACCACTTAACTTAGGTGATGGTGTTTTCAATTTCATTGCTGAAATTCCCAAAG
AATCAAGTGCAAAGATGGAAGTTGCTACTGATGAGCAGTACACCCCAATTAAACAAGACACAAAGAAGGGAAAACTTAGATACTATCCATATAAC
ATTAACTGGAACTATGGATTGCTTCCTCAAACCTGGGAAGACCCTTCATTGGCAAATGCTGAAGTTGAGGGGGCATTTGGAGATAATGACCCTGT
TGATGTTGTCGAAATTGGGGAAAAGTCCTGCTAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E393258] | SGN-U574383 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T194584 [Download][View] | Facility Assigned ID: FA0AAD26BD06RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.974 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |