EST details — SGN-E393440

Search information 
Request: 393440Match: SGN-E393440
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182135Clone name: TUS-38-M13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182135 is on microarray TOM1 spot ID 1-1-4.1.10.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5642 [cLEC-32-I21] Trace: SGN-T29793 EST: SGN-E207580 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393440Length: 466 bp (898 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E393440 [] (trimmed) CTCCACTGCCGTGACTGCCATTCTCATAAATGGTCGTAAGCTATGGGTAGCAAATGTTGGGGATTCGAGAGCAGTCCTTTCTAAGAGGGGTCAGG
CCATCCAGCTCTCGATTGATCATGAACCAAACACCGAACGAGATGACATTGAAAACACAGGTGGTTTCGTCTCAAACATGCCACGAGATGTTGCT
AGAGTGAATGGCCAACTAGCTGTATCTCGAGCTTTTGGTGACAAAAACTTGAAATCACATTTGAGCTCTGATCCTGATGTAACAAATGCTGATGT
TGATGCGGAAACAGATCTTCTCATACTTGCAAGTGATGGTCTATGGAAGGTAATGTCTAATCAAGAGGCAGTTGACATTGTGAGGAAGGTCAAAG
ATCCAAAGAAAGCATCCAAGCAATTACCGATCGAAGCATTGGTCCAAGAAAGCAAAGATGATATCCCCAGGCTTTGTTGTCCGATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393440] SGN-U580176 Tomato 200607 Build 2 23 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194766 [Download][View] Facility Assigned ID: FA0AAD26AG07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0205 Quality Trim Threshold: 14.5