EST details — SGN-E393472

Search information 
Request: 393472Match: SGN-E393472
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181990Clone name: TUS-38-G12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181990 is on microarray TOM1 spot ID 1-1-5.3.10.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7120 [cLEC-37-N4] Trace: SGN-T31290 EST: SGN-E208299 Direction: 5' Facility: TIGR
Clone: SGN-C181990 [TUS-38-G12] Trace: SGN-T194584 EST: SGN-E393258 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393472Length: 665 bp (881 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393472 [] (trimmed) AAATCCTTTTTCCTCTTAAATAGCTTCAAAAGGCATTTCCGTACAGAAAATATGGATGAAAAAGTAGCATCTTCTTGTGCTGAATAAACTTAAAG
AATGGGAACTCATTTACACGTCACACATGAGGATGGAAAAAGATTTGCTACCAGCTCAAATAACAAGCAACAAAACTAGCTCTTCAAGCTTTATC
AATTGGAAGCTATATAAGTGAAAGATCACCAGCAGGAATGGATCTCTTGACAAGCTTTGCCCAAAACTCGTTGGTTTCCATAATAACCTTAAGTG
CATAATCCTTGTTAGCTGGCTTGTTCCCAAGTCCAAACTTGTTTGCAGGCTTCCCATCAGGAATCTTATAGTCTCTAAACCAGTCCATGATAGCT
GTCAAAGTGCCCGGGAAATGCTTCTCAACATCATCAATATCATTGACAAGTGAAGCTCGGGGATCATCTAAAGATATAGCAACTATTTTCCAGTC
AAGTTCTCCTTCATCAATCATTGCCAAAGCAGCTAAAGGTTTGACCTTCAAGACCTGGCCCATTTTAGCACGACTTTCCCCAATCTCGACAAACA
TCAACAGGGTCATTATCTCCAAAATGCCCCCTCAATTTCAGCATTTGCCAATGAAGGGTCTTCCCAGGTTTGAAGAAACAACCCTAGTTTCCAGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393472] SGN-U574383 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194798 [Download][View] Facility Assigned ID: FA0AAD26BD06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.940 Expected Error Rate: 0.0121 Quality Trim Threshold: 14.5