EST details — SGN-E393784
Search information |
Request: 393784 | Match: SGN-E393784 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C172721 | Clone name: TUS-14-E7 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172721 is on microarray TOM1 spot ID 1-1-2.1.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C172721 [TUS-14-E7] | Trace: SGN-T195300 | EST: SGN-E393974 | Direction: 5' | Facility: INRA |
Clone: SGN-C172721 [TUS-14-E7] | Trace: SGN-T199582 | EST: SGN-E398256 | Direction: 5' | Facility: INRA |
Clone: SGN-C172721 [TUS-14-E7] | Trace: SGN-T199582 | EST: SGN-E398920 | Direction: 5' | Facility: INRA |
Clone: SGN-C172721 [TUS-14-E7] | Trace: SGN-T199610 | EST: SGN-E398284 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E393784 | Length: 688 bp (854 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393784 [] (trimmed)
AGCAGAAAATCATTAATATTAGTACACTGATATAGTTATATATTAAAAGTACTCCACTCTTACAAAATAATATAGCTCACTTATAAAATAGCTAC
TATGCCAATCTTAAACTCCTAGTTACCTGAACCATAATTGACAAAACAACATTTATTTATGTTAATTATTAATATAACATGACTCAAAAGATAAA
ACATGATAACCATGTCTATAACTTGTACAAAATTAAAGGAGCACCAAATTGAGGTTGAAGCATTAATGGATGAGGAGCATGAGAATAAGATGAAG
AGAGTTCAAATGCATAGTGTTTAAGTATCATAGCCATTGCCATTTTTGCCTCTAACATAGCAAAGTTTTGTCCAATGCATATTCTAGGACCCCAA
CCAAATGGAAAAAACACAAGTTGTCCTTTTGTTGCTTTTAATATTCCATCACTAAACCTCTCTGGATTGAATTCCATTGCATCATCTCCCCATAT
TTTAGTGTCATGTTGCAACAATATTGTTGGTAACAAAAGTTGCACACCACCTGGTAAACACAAATTTCCTAACTTTGTTTTTGTTTTTACCATTC
TAGTCATCATATATCCTGCTGGATACAATCGTAAGACCTCGTTTAAGATCATAGTCACTACTTTTAGTTGATTCAACTTGTCATAATCAACTTCA
TTACTCCCAAACACTTGTAAAAA
TATGCCAATCTTAAACTCCTAGTTACCTGAACCATAATTGACAAAACAACATTTATTTATGTTAATTATTAATATAACATGACTCAAAAGATAAA
ACATGATAACCATGTCTATAACTTGTACAAAATTAAAGGAGCACCAAATTGAGGTTGAAGCATTAATGGATGAGGAGCATGAGAATAAGATGAAG
AGAGTTCAAATGCATAGTGTTTAAGTATCATAGCCATTGCCATTTTTGCCTCTAACATAGCAAAGTTTTGTCCAATGCATATTCTAGGACCCCAA
CCAAATGGAAAAAACACAAGTTGTCCTTTTGTTGCTTTTAATATTCCATCACTAAACCTCTCTGGATTGAATTCCATTGCATCATCTCCCCATAT
TTTAGTGTCATGTTGCAACAATATTGTTGGTAACAAAAGTTGCACACCACCTGGTAAACACAAATTTCCTAACTTTGTTTTTGTTTTTACCATTC
TAGTCATCATATATCCTGCTGGATACAATCGTAAGACCTCGTTTAAGATCATAGTCACTACTTTTAGTTGATTCAACTTGTCATAATCAACTTCA
TTACTCCCAAACACTTGTAAAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E393784] | SGN-U578818 | Tomato 200607 | Build 2 | 80 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T195110 [Download][View] | Facility Assigned ID: FA0AAD2AC04FM2 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.927 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |