EST details — SGN-E393897
| Search information |
| Request: 393897 | Match: SGN-E393897 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172728 | Clone name: TUS-14-E14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172728 is on microarray TOM1 spot ID 1-1-3.1.20.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10861 [cLEC-6-H3] | Trace: SGN-T24171 | EST: SGN-E202510 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T195782 | EST: SGN-E394456 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T195782 | EST: SGN-E399044 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T199551 | EST: SGN-E398225 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T199598 | EST: SGN-E398272 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T199598 | EST: SGN-E399045 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393897 | Length: 595 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393897 [] (trimmed)
AAGTTTAAAGGTTCAGATGGACTTTTATGGAATCAGGACAGAATGTAACCACAATAACAGTACAATTCAGATTGACAGAAGAAATAGAACTATTT
TCTTCAAGTAAACCATGGACAAGACAGGTTTAGAAGTTGATATCATGTACAAACATTGAAGGGGTTATAATATTGTCCATGATCTGCTAAACCCT
TAGGGATCTGCTTTTCCAGCAAGTTCATCATCACTGGAGACATTTTCTTCTTCACTCAACTCTTCATCACTAGATTTTTCTTCAGGTGGAGCCCC
AGCGTCTTCTTTCTTAGCGTATTTCTCGCAATACTCTTTCACCTTTTGATCATAAGTAGTACGATCGCGCATCATGAGAGCTGCAGCTTCTCCAT
TCAGGGGATCCGATGGGTTAGGATATAAAAGGAGTTGGGGAAGGAACACTTCAAAAACATTTACAAGATCAAACATGGGGCTCCAGGTTTGATTG
ATAACATCTAAGCAGACTGAACCTGACATCTCATCCACATTCGGATGGTAAATCTTGTTAACAAAACCAATGGATGGTGACTTGTAAGGATAGGC
ATCTGGGAGCTCTACCCTCACTTTC
TCTTCAAGTAAACCATGGACAAGACAGGTTTAGAAGTTGATATCATGTACAAACATTGAAGGGGTTATAATATTGTCCATGATCTGCTAAACCCT
TAGGGATCTGCTTTTCCAGCAAGTTCATCATCACTGGAGACATTTTCTTCTTCACTCAACTCTTCATCACTAGATTTTTCTTCAGGTGGAGCCCC
AGCGTCTTCTTTCTTAGCGTATTTCTCGCAATACTCTTTCACCTTTTGATCATAAGTAGTACGATCGCGCATCATGAGAGCTGCAGCTTCTCCAT
TCAGGGGATCCGATGGGTTAGGATATAAAAGGAGTTGGGGAAGGAACACTTCAAAAACATTTACAAGATCAAACATGGGGCTCCAGGTTTGATTG
ATAACATCTAAGCAGACTGAACCTGACATCTCATCCACATTCGGATGGTAAATCTTGTTAACAAAACCAATGGATGGTGACTTGTAAGGATAGGC
ATCTGGGAGCTCTACCCTCACTTTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393897] | SGN-U562770 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195223 [Download][View] | Facility Assigned ID: FA0AAD2BC07FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0135 | Quality Trim Threshold: 12.5 |
Working
