EST details — SGN-E393926

Search information 
Request: 393926Match: SGN-E393926
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172880Clone name: TUS-14-K22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172880 is on microarray TOM1 spot ID 1-1-3.3.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172880 [TUS-14-K22] Trace: SGN-T195695 EST: SGN-E394369 Direction: 3' Facility: INRA
Clone: SGN-C172880 [TUS-14-K22] Trace: SGN-T195695 EST: SGN-E399087 Direction: 3' Facility: INRA
Clone: SGN-C172880 [TUS-14-K22] Trace: SGN-T199603 EST: SGN-E398277 Direction: 5' Facility: INRA
Clone: SGN-C172880 [TUS-14-K22] Trace: SGN-T200220 EST: SGN-E399088 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E393926Length: 612 bp (829 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393926 [] (trimmed) CTGAACACACATCTCCTTAAGCAATTTCTTGTACACGTCCATGCCTTTGAAGTGCGATTTCTAATTTTAAAAAATTACATTCCTAATTTGAGAAA
AGGAAAAAATATATATATTAAAAAGGTAGCTCGTCATATATCTCCCTTGAGCTTGTGATGCATCATTCACTCCTCCATTAAAACCTTTCCACAAA
AGCCTTCTGAAAAGTGAGATCCAACTTAGTTCAACCACAACCACAAATTGGCAGGGACTAACAGCAACTTAATGCAAAAACTGAAAGCAATATAA
ATCCTGTAAATAGAGCTGCTAATCGTCTCTCCTTTTAACATAAAATTCTATAACTCTACTGCCTACAAATATCCTCGATGTCTGTTAAAGGAGCT
GCATTGCTGATAAAGCGTTTATCTGGAAAATTAACCACCAATTGACCACAGGCACCACTTATATCTTGGCCCATCTCCTTGCGAACAGTTGTGCG
AATATCATAAATGTCCCTTAATATTTTCTGAAACCTGGCGACTTTCTGATTTGTACTGGTAATGAATTGACTTAATGATCCAATTGGATTAAAAG
GTATGAAATTCACAACCACTTGAAATGCTTCTAGCAGTTTCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393926] SGN-U570555 Tomato 200607 Build 2 45 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195252 [Download][View] Facility Assigned ID: FA0AAD2BF11FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.947 Expected Error Rate: 0.0058 Quality Trim Threshold: 14.5