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EST details — SGN-E393989

Search information 
Request: 393989Match: SGN-E393989
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172829Clone name: TUS-14-I19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172829 is on microarray TOM1 spot ID 1-1-6.1.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C11011 [cLEC-6-O18] Trace: SGN-T23981 EST: SGN-E202320 Direction: 5' Facility: TIGR
Clone: SGN-C172829 [TUS-14-I19] Trace: SGN-T195128 EST: SGN-E393802 Direction: 3' Facility: INRA
Clone: SGN-C172829 [TUS-14-I19] Trace: SGN-T195314 EST: SGN-E393988 Direction: 3' Facility: INRA
Clone: SGN-C172829 [TUS-14-I19] Trace: SGN-T195314 EST: SGN-E398951 Direction: 3' Facility: INRA
Clone: SGN-C172829 [TUS-14-I19] Trace: SGN-T200442 EST: SGN-E399524 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393989Length: 204 bp (917 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393989 [] (trimmed) ACCTTTTTTAGCAATGCTCTGTTTCTCTCAATTTCCTATCCCTCTCTTCTTTTTCCTCTCTATCCTCCTTATCCTCCCACACCATTGCCTCGCAA
ACTGCCACGTGGACGATGAGACCGGGTTGTTAGGATTCAAATCGTGTATCAAATCTGACCCGTCAAGTCATCAGGCATACACCAAATCGCGGACC
GATAATTAAAAATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393989] SGN-U575404 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195315 [Download][View] Facility Assigned ID: FA0AAD2AE10RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0212 Quality Trim Threshold: 14.5