EST details — SGN-E393999
| Search information |
| Request: 393999 | Match: SGN-E393999 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172927 | Clone name: TUS-14-M21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172927 is on microarray TOM1 spot ID 1-1-4.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14298 [cLEC-7-H20] | Trace: SGN-T25494 | EST: SGN-E202212 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172927 [TUS-14-M21] | Trace: SGN-T195604 | EST: SGN-E394278 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172927 [TUS-14-M21] | Trace: SGN-T195604 | EST: SGN-E398986 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172927 [TUS-14-M21] | Trace: SGN-T195762 | EST: SGN-E394436 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172927 [TUS-14-M21] | Trace: SGN-T195762 | EST: SGN-E398985 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172927 [TUS-14-M21] | Trace: SGN-T199440 | EST: SGN-E398114 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393999 | Length: 699 bp (829 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393999 [] (trimmed)
GCAGAAGCAATTCATTTGTTATCTGAAGGTCAAGCAGAGGGGATAACTCAAAATACTTAAAGGTAGAAGCTATCAGCTAAGAACTACACATGGAC
AAGGGGGCTATTCTTGAAGCTGGAGAGGGAAGAAATACCGTTGAACTTGTGAAATCAGCCTCTGAAAAACATCTTGACCTTTTGAGGCCATCAGC
TCGATATTATTCAGTGTCGAAAGGGCAAGCTGGTGATGCAGAAGACCGTGAGAAGGGAAAGTATACCTTGATTAGAGATGTAGAGGACCTTCAAA
CAGGGTTCTATGATAAACCTCTTCCTTGCTTTGGTTGCGGAATCGGATGGTTTTCATTTCTTCTGGGATTTCTATGCCCGTTGATGTGGTATTAT
GCCACGATACTTTATTTCGGAAACTACTACCGTAAGGATCCTAGAGAACGTGCTGGGCTTGCTGCATCTGCTATTGCTGCAATGGTGTTTTCTGT
TGTCTTGCTTATTATAGCAGCAACTCTCTTCTTGTAGCTTCTGCGATGCAAAGTTTCATACTAATATGATCAATGTTACTTGTTCTGTAGTCAAG
TCAAATGCCTCCAAACTCTCCAATTGTAAATGTTGTGACGAATGAAAAAAAAAGATTCTTATACAAAACTATATACATGGTCATTATGTGTTCCA
TCCAGATTTATTGGTGGGAAATCCTCGTTTTTTT
AAGGGGGCTATTCTTGAAGCTGGAGAGGGAAGAAATACCGTTGAACTTGTGAAATCAGCCTCTGAAAAACATCTTGACCTTTTGAGGCCATCAGC
TCGATATTATTCAGTGTCGAAAGGGCAAGCTGGTGATGCAGAAGACCGTGAGAAGGGAAAGTATACCTTGATTAGAGATGTAGAGGACCTTCAAA
CAGGGTTCTATGATAAACCTCTTCCTTGCTTTGGTTGCGGAATCGGATGGTTTTCATTTCTTCTGGGATTTCTATGCCCGTTGATGTGGTATTAT
GCCACGATACTTTATTTCGGAAACTACTACCGTAAGGATCCTAGAGAACGTGCTGGGCTTGCTGCATCTGCTATTGCTGCAATGGTGTTTTCTGT
TGTCTTGCTTATTATAGCAGCAACTCTCTTCTTGTAGCTTCTGCGATGCAAAGTTTCATACTAATATGATCAATGTTACTTGTTCTGTAGTCAAG
TCAAATGCCTCCAAACTCTCCAATTGTAAATGTTGTGACGAATGAAAAAAAAAGATTCTTATACAAAACTATATACATGGTCATTATGTGTTCCA
TCCAGATTTATTGGTGGGAAATCCTCGTTTTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393999] | SGN-U574701 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195325 [Download][View] | Facility Assigned ID: FA0AAD2AG11RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.976 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
