EST details — SGN-E394133
Search information |
Request: 394133 | Match: SGN-E394133 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C182931 | Clone name: TUS-40-N17 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182931 is on microarray TOM1 spot ID 1-1-8.2.5.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C133079 [cTOD-4-L14] | Trace: SGN-T142504 | EST: SGN-E330339 | Direction: 5' | Facility: TIGR |
Clone: SGN-C182931 [TUS-40-N17] | Trace: SGN-T199565 | EST: SGN-E398239 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E394133 | Length: 526 bp (857 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394133 [] (trimmed)
GCATAGATCTTCCTAAGTTTGAGGTCTAACCAACCGAGATAAATGGGGAAAGAACTAGATCACTCCAAGAGCCTTGACAAGGAAGAGGCTGTCAT
CATGCAGAATATCGATGAGGATGAGATTTTTCCACCTGAAAAAAACAGGAATAGTTTGTGCATTCGGAAAATAGAAGGCAATAAAAAGACTAAGA
CGCGCTTAATGAAGATGCGAAGCCTAGACTCTGCTGAGGAATCACCAGTACATGGAAAATCTTTGTGTCTAGCAAGATCATTTAGTTCTCATTTT
CTTATTAACATAGATGAGATGATGAGTGATGTTGGTAATGAAAAAGGTGCACTTATAAAGAACAATATATTGAAATCGAAGGATCAGGAGGATGA
CGATTCATGCAGCTGGAATAGAATTCAGATTGAGCCTACCTTACGTATACGTCTCAAGTTTCAAGATGTGAAGTACTCCGTTGCACTGAAGGGAG
TGGAGAATTCTGATACAAAAAAGTGCATACTTCAAGGAATGAGTTGGGTTC
CATGCAGAATATCGATGAGGATGAGATTTTTCCACCTGAAAAAAACAGGAATAGTTTGTGCATTCGGAAAATAGAAGGCAATAAAAAGACTAAGA
CGCGCTTAATGAAGATGCGAAGCCTAGACTCTGCTGAGGAATCACCAGTACATGGAAAATCTTTGTGTCTAGCAAGATCATTTAGTTCTCATTTT
CTTATTAACATAGATGAGATGATGAGTGATGTTGGTAATGAAAAAGGTGCACTTATAAAGAACAATATATTGAAATCGAAGGATCAGGAGGATGA
CGATTCATGCAGCTGGAATAGAATTCAGATTGAGCCTACCTTACGTATACGTCTCAAGTTTCAAGATGTGAAGTACTCCGTTGCACTGAAGGGAG
TGGAGAATTCTGATACAAAAAAGTGCATACTTCAAGGAATGAGTTGGGTTC
Unigenes |
Current Unigene builds | |||||
[SGN-E394133] | SGN-U566297 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T195459 [Download][View] | Facility Assigned ID: FA0AAD28CG09RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.953 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 14.5 |