EST details — SGN-E394133

Search information 
Request: 394133Match: SGN-E394133
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182931Clone name: TUS-40-N17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182931 is on microarray TOM1 spot ID 1-1-8.2.5.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C133079 [cTOD-4-L14] Trace: SGN-T142504 EST: SGN-E330339 Direction: 5' Facility: TIGR
Clone: SGN-C182931 [TUS-40-N17] Trace: SGN-T199565 EST: SGN-E398239 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394133Length: 526 bp (857 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394133 [] (trimmed) GCATAGATCTTCCTAAGTTTGAGGTCTAACCAACCGAGATAAATGGGGAAAGAACTAGATCACTCCAAGAGCCTTGACAAGGAAGAGGCTGTCAT
CATGCAGAATATCGATGAGGATGAGATTTTTCCACCTGAAAAAAACAGGAATAGTTTGTGCATTCGGAAAATAGAAGGCAATAAAAAGACTAAGA
CGCGCTTAATGAAGATGCGAAGCCTAGACTCTGCTGAGGAATCACCAGTACATGGAAAATCTTTGTGTCTAGCAAGATCATTTAGTTCTCATTTT
CTTATTAACATAGATGAGATGATGAGTGATGTTGGTAATGAAAAAGGTGCACTTATAAAGAACAATATATTGAAATCGAAGGATCAGGAGGATGA
CGATTCATGCAGCTGGAATAGAATTCAGATTGAGCCTACCTTACGTATACGTCTCAAGTTTCAAGATGTGAAGTACTCCGTTGCACTGAAGGGAG
TGGAGAATTCTGATACAAAAAAGTGCATACTTCAAGGAATGAGTTGGGTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394133] SGN-U566297 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195459 [Download][View] Facility Assigned ID: FA0AAD28CG09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0035 Quality Trim Threshold: 14.5