EST details — SGN-E394166
| Search information |
| Request: 394166 | Match: SGN-E394166 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183579 | Clone name: TUS-42-I17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183579 is on microarray TOM1 spot ID 1-1-8.1.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C71776 [cLER-19-B17] | Trace: SGN-T96590 | EST: SGN-E285018 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183579 [TUS-42-I17] | Trace: SGN-T194942 | EST: SGN-E393616 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183579 [TUS-42-I17] | Trace: SGN-T194942 | EST: SGN-E399560 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183579 [TUS-42-I17] | Trace: SGN-T194943 | EST: SGN-E393617 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183579 [TUS-42-I17] | Trace: SGN-T195959 | EST: SGN-E394633 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183579 [TUS-42-I17] | Trace: SGN-T195959 | EST: SGN-E399170 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394166 | Length: 577 bp (863 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394166 [] (trimmed)
ATAATAAAGATCTTACACTAAAAGACTAGAACTACTAAATAGTACATCCAACAAAACAAACAAAGGGCTACACAGTTGCTTTGCCAAATTTTCTA
TTGAACAAAGTTATGTATTTTTTTCTATGCAAAAGTAAACAATAGAAACAGTTTCAATCAAATCTAATTAATAATTATCAATATCATCCCCACTA
CAACATTATACAAACAACAAATAAAAATTTAAAAACCCAAACTAAAGTCATACAATTTTGTAACCAGCACCCCCTTTAGCCATTTCAACAGCAGT
TCCATTCCTAGTTCCAGGATAATCAACTTCAGTCATGAACTTAGACCAGAACCAATGTTCTTTCCACACAATCACCATCTCTTCTATCGGAATAT
TTTTCGTCTCAGGCAAGAAGAAGTATATGAACACAGTCATAATCACCACAAAGAAGGCGAAAAACAGAAACAATCCAAACTTCAAATGACACAAC
ATTGTTAAAAAAACTTGTGCTACTGCAAATGTGAAGATCATGTTCACTGAAACATTGATACTTTGTGCAGCTGATCCAATTTCCAGTGGGAAAAT
TTTCACT
TTGAACAAAGTTATGTATTTTTTTCTATGCAAAAGTAAACAATAGAAACAGTTTCAATCAAATCTAATTAATAATTATCAATATCATCCCCACTA
CAACATTATACAAACAACAAATAAAAATTTAAAAACCCAAACTAAAGTCATACAATTTTGTAACCAGCACCCCCTTTAGCCATTTCAACAGCAGT
TCCATTCCTAGTTCCAGGATAATCAACTTCAGTCATGAACTTAGACCAGAACCAATGTTCTTTCCACACAATCACCATCTCTTCTATCGGAATAT
TTTTCGTCTCAGGCAAGAAGAAGTATATGAACACAGTCATAATCACCACAAAGAAGGCGAAAAACAGAAACAATCCAAACTTCAAATGACACAAC
ATTGTTAAAAAAACTTGTGCTACTGCAAATGTGAAGATCATGTTCACTGAAACATTGATACTTTGTGCAGCTGATCCAATTTCCAGTGGGAAAAT
TTTCACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394166] | SGN-U584262 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195492 [Download][View] | Facility Assigned ID: FA0AAD30AE09FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.918 | Expected Error Rate: 0.0050 | Quality Trim Threshold: 14.5 |
Working
