EST details — SGN-E394278

Search information 
Request: 394278Match: SGN-E394278
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172927Clone name: TUS-14-M21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172927 is on microarray TOM1 spot ID 1-1-4.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14298 [cLEC-7-H20] Trace: SGN-T25494 EST: SGN-E202212 Direction: 5' Facility: TIGR
Clone: SGN-C172927 [TUS-14-M21] Trace: SGN-T195325 EST: SGN-E393999 Direction: 5' Facility: INRA
Clone: SGN-C172927 [TUS-14-M21] Trace: SGN-T195604 EST: SGN-E398986 Direction: 5' Facility: INRA
Clone: SGN-C172927 [TUS-14-M21] Trace: SGN-T195762 EST: SGN-E394436 Direction: 3' Facility: INRA
Clone: SGN-C172927 [TUS-14-M21] Trace: SGN-T195762 EST: SGN-E398985 Direction: 3' Facility: INRA
Clone: SGN-C172927 [TUS-14-M21] Trace: SGN-T199440 EST: SGN-E398114 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394278Length: 620 bp (839 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394278 [] (trimmed) GAAGTTCCATAATACTTTTATATCATCAAACACTTGGAAACAAAAGGAAAATATACATAAAAACACTCAGCTCCTTTGGATTTTAACTTTTTCCA
AGCAGGACTTTCCATAAATTCGGCTGCTTTGTTGCATCTCCAAGTAATCCTTGTACTTCATTGGAATATAATTAGCTGATGGGCTGTTCTCTTTT
TCCATCAATGGAAAAGCTGGCTTTACAATTGTGTCTAATGATGGACCATGAGCTACCACTACTGATATCCTTGTTACTTTGTTGTTCACCACTGC
TCTATGCATGTTGCTCTTGTACTTCCCATTACTAAATATCTACCATATTAAATAAAATTTTGGTCTTGAAGTAACAGTAAAATAACTTGCTATTT
CAATCTTACTATTAAAAGTCTTGGCAACAATGAACTCAATACTTTAAAAGGCCGATGATTAATTTTAAATCACGCGTCTTTGTGACTGTAAACAT
GAAAAATGGATTTAATTACCTCGAGATGATCGCCGGTATTAACCAAGAGAGAGTAGTTAGGAAGGGCCTTGACGTTAATCCATTTGCCTTGATGT
TGAACCTGGAGACCTCCAACTTGGTTATGAATGAAAAGTGTTAAAAGGCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394278] SGN-U580965 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195604 [Download][View] Facility Assigned ID: FA0AAD2AG11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0112 Quality Trim Threshold: 14.5