EST details — SGN-E394325
| Search information |
| Request: 394325 | Match: SGN-E394325 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172670 | Clone name: TUS-14-C4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172670 is on microarray TOM1 spot ID 1-1-5.3.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10779 [cLEC-6-E11] | Trace: SGN-T24076 | EST: SGN-E202415 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172670 [TUS-14-C4] | Trace: SGN-T195209 | EST: SGN-E393883 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172670 [TUS-14-C4] | Trace: SGN-T195651 | EST: SGN-E399536 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172670 [TUS-14-C4] | Trace: SGN-T195652 | EST: SGN-E394326 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172670 [TUS-14-C4] | Trace: SGN-T200205 | EST: SGN-E399024 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394325 | Length: 570 bp (865 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394325 [] (trimmed)
GTAATTAGGGAATGAAAATCCTACATATGACAAGTAAGAAGAATCATTGGAAGGAATGAACAATATATGTCACATCCTAATTCTATTCTGTGATA
AGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCC
TTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAA
GGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAA
CTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGAT
GCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAAC
AGGTTCCCTGGTTCATAAACTCTAAGCTGACTGGTCATATCTCTCTACCAAGAGAAAATAGGGAAAATACCATACTCTTAAGATTCTATAAACCC
TTGATTGGTACATATACTTTTTAAGTTTGTAACTCTACCTGCTTTCTTAACCTAGTGATGGAGTTACCTAATGTGTTGAACCCCTGAAGGATCAA
GGACCATAAATAGTTGGAACAAGTCATCATTGCCTTTTAAAAGCAAATATTTCAACTATTTATTTATTAGGACAAAATCAATTGAAAAAAAGAAA
CTTAAGAGTTCCATTATTTATGGTCAAATAGAAAAAGATAAAACCAAAATAACGGAGTTGCAATTGTGTACTCCTTGTTGTTATATCTTTAAGAT
GCAATGACTTTTTTTATGCCAACTCTGTTTTTAAAAATTACTTGGTTAGAGCTCCTTTATATGTATTCCTCTTCTTCGATTAACATGGAAGTAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394325] | SGN-U575636 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195651 [Download][View] | Facility Assigned ID: FA0AAD2BB02FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.931 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |
Working
