EST details — SGN-E394344
| Search information |
| Request: 394344 | Match: SGN-E394344 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172738 | Clone name: TUS-14-E24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172738 is on microarray TOM1 spot ID 1-1-1.1.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10877 [cLEC-6-I19] | Trace: SGN-T24089 | EST: SGN-E202428 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172738 [TUS-14-E24] | Trace: SGN-T195228 | EST: SGN-E393902 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172738 [TUS-14-E24] | Trace: SGN-T195669 | EST: SGN-E394343 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172738 [TUS-14-E24] | Trace: SGN-T195669 | EST: SGN-E399049 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172738 [TUS-14-E24] | Trace: SGN-T200210 | EST: SGN-E399050 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394344 | Length: 638 bp (793 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394344 [] (trimmed)
CACTAATGGGGTCTGGGGAGGGTAGAGTGTAGGCAGACCTTACCACTACCTCGTGGAGGTAGAGAGGCTGTATTACAATCTCAAATTCCTCGCTG
GTAAGAAACTATGGATGCACTGCTTGCAAGCATTTTGAAGTTTGTCTTAGTAAGCTAAAGCCATGACCTTTTATCTTAGATTTAATTAAAGTATT
GAGACACAGTAACTTCTCTACATGTTTGAATTTCTTTTGGTTAGGTTCTACATCAAACGTATATAAGTTTATTTTGTATCGCCTCTTTATGGACT
TCAAATACTGAGCTTTAATTGCTCCTATGACATTAAAAATATTTAATGCGTAAATTGTTGGAATAATATTGTTGCATTTGGCTTTAGTGTCTGGT
TGTGGAAATTCTTCTCCATGGAAGCAAACCGAGGGAGTTAGCTATGTGCAAAGAATTAACTGGTAAAAAATAGTTAAACCATTATCTTTTCTATC
TCTCAACCTATACTTGCAGAGCATAGGTGATCTCAAGTTCCAGATAATGGAAGATCGTTGACAGGCAGCGTAAATAGTCAAATTCCAACAATTCA
TATAACCGACTCAATTTTGTTCAAAAAAAATAAATTGATGGATCGCTTCTATATAGCTGCTGTAAAAG
GTAAGAAACTATGGATGCACTGCTTGCAAGCATTTTGAAGTTTGTCTTAGTAAGCTAAAGCCATGACCTTTTATCTTAGATTTAATTAAAGTATT
GAGACACAGTAACTTCTCTACATGTTTGAATTTCTTTTGGTTAGGTTCTACATCAAACGTATATAAGTTTATTTTGTATCGCCTCTTTATGGACT
TCAAATACTGAGCTTTAATTGCTCCTATGACATTAAAAATATTTAATGCGTAAATTGTTGGAATAATATTGTTGCATTTGGCTTTAGTGTCTGGT
TGTGGAAATTCTTCTCCATGGAAGCAAACCGAGGGAGTTAGCTATGTGCAAAGAATTAACTGGTAAAAAATAGTTAAACCATTATCTTTTCTATC
TCTCAACCTATACTTGCAGAGCATAGGTGATCTCAAGTTCCAGATAATGGAAGATCGTTGACAGGCAGCGTAAATAGTCAAATTCCAACAATTCA
TATAACCGACTCAATTTTGTTCAAAAAAAATAAATTGATGGATCGCTTCTATATAGCTGCTGTAAAAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394344] | SGN-U577743 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195670 [Download][View] | Facility Assigned ID: FA0AAD2BC12RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |
Working
