EST details — SGN-E394369
Search information |
Request: 394369 | Match: SGN-E394369 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C172880 | Clone name: TUS-14-K22 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172880 is on microarray TOM1 spot ID 1-1-3.3.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C172880 [TUS-14-K22] | Trace: SGN-T195252 | EST: SGN-E393926 | Direction: 3' | Facility: INRA |
Clone: SGN-C172880 [TUS-14-K22] | Trace: SGN-T195695 | EST: SGN-E399087 | Direction: 3' | Facility: INRA |
Clone: SGN-C172880 [TUS-14-K22] | Trace: SGN-T199603 | EST: SGN-E398277 | Direction: 5' | Facility: INRA |
Clone: SGN-C172880 [TUS-14-K22] | Trace: SGN-T200220 | EST: SGN-E399088 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E394369 | Length: 637 bp (829 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394369 [] (trimmed)
GAACCATGGGGTTCAAAAATAACCTGTCTTCTGGAGAGATAGTTGAACAGTTGGTGCATGCCTCTCATTTATCAACCATCCGTAATATTGTTTTC
ATGGGAATGGGAGAACCGTTGAACAACTACTCTTCCCTGGTGGATGCCATACGAGTGATGACAGCATCTCCATTTCAGATCTCTCCTAGAAAAAT
TACAGTCTCAACGGTTGGAATAATTCATGCCATTAACAAGCTCCACAATGACATCCCAAATTTGAACTTGGCAGTCTCTTTGCATGCACCGGTGC
AAGATATCCGTTGTCAGATAATGCCTGCAGCAAGAGCTTTTCCTTTGGAAAAACTCATGAATGCACTGCAAGAATATCAAAAGAAAAGCCAGCAA
AAGATCTTTATAGAATATATTATGCTTGATGGACTAAATGATGAGGAGCAACACGCCCATCAGCTTGGGAAACTGCTAGAAGCATTTCAAGTGGT
TGTGAATCTCATACCTTTTAATCCAATTGGATCATTAAGTCAATTCATTACCAGTACAAATCAGAAAGTCGCCAGGTTTCAGAGAATATTAAGGG
ACATCTATGATATTCGCACAACTGTTCGCAAGGAGATGGGCCAAGATATAAGTGGTGCCTGTGGTCA
ATGGGAATGGGAGAACCGTTGAACAACTACTCTTCCCTGGTGGATGCCATACGAGTGATGACAGCATCTCCATTTCAGATCTCTCCTAGAAAAAT
TACAGTCTCAACGGTTGGAATAATTCATGCCATTAACAAGCTCCACAATGACATCCCAAATTTGAACTTGGCAGTCTCTTTGCATGCACCGGTGC
AAGATATCCGTTGTCAGATAATGCCTGCAGCAAGAGCTTTTCCTTTGGAAAAACTCATGAATGCACTGCAAGAATATCAAAAGAAAAGCCAGCAA
AAGATCTTTATAGAATATATTATGCTTGATGGACTAAATGATGAGGAGCAACACGCCCATCAGCTTGGGAAACTGCTAGAAGCATTTCAAGTGGT
TGTGAATCTCATACCTTTTAATCCAATTGGATCATTAAGTCAATTCATTACCAGTACAAATCAGAAAGTCGCCAGGTTTCAGAGAATATTAAGGG
ACATCTATGATATTCGCACAACTGTTCGCAAGGAGATGGGCCAAGATATAAGTGGTGCCTGTGGTCA
Unigenes |
Current Unigene builds | |||||
[SGN-E394369] | SGN-U570555 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T195695 [Download][View] | Facility Assigned ID: FA0AAD2BF11FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0069 | Quality Trim Threshold: 14.5 |