EST details — SGN-E394487
Search information |
Request: 394487 | Match: SGN-E394487 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183077 | Clone name: TUS-41-D19 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183077 is on microarray TOM1 spot ID 1-1-6.4.3.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C67885 [cLEN-21-O8] | Trace: SGN-T91559 | EST: SGN-E276300 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183077 [TUS-41-D19] | Trace: SGN-T195174 | EST: SGN-E393848 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E394487 | Length: 272 bp (874 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394487 [] (trimmed)
CTAGAGTTGAGGAGAGTTATGACAAAATGAGTGAATTAAAAGCGTTTGATGATACTAAGGCCGGTGTTAAAGGACTTGTTGATTCTGGAATTACT
AAAGTACCTCAAATATTCGTTCTACCGCCAAAAGACAGGGCTAAAAAATGTGAAACACATTTCGTTTTTCCAGTGATAGACCTTCAAGGTATCGA
TGAGGATCCGATTAAGCATAAGGAGATAGTGGACAAAGTTCGAGATGCATCGGACAAATGGGGTTTTTTCGGAGGGGATAAA
AAAGTACCTCAAATATTCGTTCTACCGCCAAAAGACAGGGCTAAAAAATGTGAAACACATTTCGTTTTTCCAGTGATAGACCTTCAAGGTATCGA
TGAGGATCCGATTAAGCATAAGGAGATAGTGGACAAAGTTCGAGATGCATCGGACAAATGGGGTTTTTTCGGAGGGGATAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E394487] | SGN-U578448 | Tomato 200607 | Build 2 | 590 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T195813 [Download][View] | Facility Assigned ID: FA0AAD29CB10FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.955 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |