EST details — SGN-E394748
| Search information |
| Request: 394748 | Match: SGN-E394748 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183459 | Clone name: TUS-42-D17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183459 is on microarray TOM1 spot ID 1-1-8.4.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32465 [cLEG-1-M23] | Trace: SGN-T64446 | EST: SGN-E248383 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183459 [TUS-42-D17] | Trace: SGN-T196073 | EST: SGN-E394747 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183459 [TUS-42-D17] | Trace: SGN-T196073 | EST: SGN-E399354 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183459 [TUS-42-D17] | Trace: SGN-T200344 | EST: SGN-E399355 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394748 | Length: 593 bp (845 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394748 [] (trimmed)
GAGTAACTATATATATGTTATATATTATGGTTCAAACTTAAAAGGGAGGAAGTTGTTCTCATTTTATATATATTTCTTCCAAATATAGATCAATC
CTAGCCATTAAATTGACCTAAATCAAGGGTCCTAATTAATCTCACAACCCTTTTTCCCAACTAACACAAGAAATAAAATAAATTAAGACAATTTC
TATTTTTTTTCTTTTATCTCTGCTGTTCCATCATAAGACAGAAATCGTCGAAGCAGACGAATCCATCTCCATTTTTATCTACACTTGTTATCATA
CGCTTACATTCCTCTAACGTGCACCGTTCATCGCCGATCATTCTAAACACGTTAAACAATTCCTCACCGGTGATTTTCCCGTCGTGATCCTCATC
GAAGAAATCAAACGCATCTCTCATCTCACCTGCATCTCCCGCTGCCGACGTCGGTGTCGACTCAAACGCCGAGGTAATAGTTTCAAAATTCTCTA
AACTAATACATCCATCTCCGTTCTCATCCAATTCATCAAGCAACAACACAAAGTTCCTCTTCACTCGGTGGAGATTTACCTCCAACTCTGCTTAA
AATCGCTTCGAGTTTCTCCTTCT
CTAGCCATTAAATTGACCTAAATCAAGGGTCCTAATTAATCTCACAACCCTTTTTCCCAACTAACACAAGAAATAAAATAAATTAAGACAATTTC
TATTTTTTTTCTTTTATCTCTGCTGTTCCATCATAAGACAGAAATCGTCGAAGCAGACGAATCCATCTCCATTTTTATCTACACTTGTTATCATA
CGCTTACATTCCTCTAACGTGCACCGTTCATCGCCGATCATTCTAAACACGTTAAACAATTCCTCACCGGTGATTTTCCCGTCGTGATCCTCATC
GAAGAAATCAAACGCATCTCTCATCTCACCTGCATCTCCCGCTGCCGACGTCGGTGTCGACTCAAACGCCGAGGTAATAGTTTCAAAATTCTCTA
AACTAATACATCCATCTCCGTTCTCATCCAATTCATCAAGCAACAACACAAAGTTCCTCTTCACTCGGTGGAGATTTACCTCCAACTCTGCTTAA
AATCGCTTCGAGTTTCTCCTTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394748] | SGN-U581707 | Tomato 200607 | Build 2 | 43 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196074 [Download][View] | Facility Assigned ID: FA0AAD30CB09RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |
Working
