EST details — SGN-E394899

Search information 
Request: 394899Match: SGN-E394899
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183867Clone name: TUS-43-E17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183867 is on microarray TOM1 spot ID 1-1-8.1.18.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10723 [cLEC-6-B18] Trace: SGN-T24205 EST: SGN-E202544 Direction: 5' Facility: TIGR
Clone: SGN-C183867 [TUS-43-E17] Trace: SGN-T1784 EST: SGN-E378724 Direction: 5' Facility: Giov. Lab
Clone: SGN-C183867 [TUS-43-E17] Trace: SGN-T196224 EST: SGN-E394898 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394899Length: 588 bp (882 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394899 [] (trimmed) GAAAAAGTGTCACCTGGTTGGGGTCCTAATAAAATTCCAAGACTTGGTAATACCTCTACTAATAATAAACCTGCTGATCAAGCTACTGAGGCTAC
TATGAGAAAGGCTCGGGTCTCGGTCAGGGCTCGATCAGAAGCTCCCATGATCACAGATGGCTGTCAATGGCGAAAGTATGGGCAGAAAATGGCTA
AGGGAAACCCGTGCCCTCGAGCTTATTACCGGTGCACCATGGCAGCTGGTTGTCCAGTTCGGAAGCAAGTTCAAAGATGTGCAGAGGACAGAACA
ATCTTGATCACAACTTATGAAGGTACTCACAACCATCCGTTGCCTCCGGCAGCCATAGCGATGGCCTCGACAACTTCCTCAGCAGCGAAAATGTT
GCTCTCGGGCTCTATGCCAAGTGCAGATGGGCTAATGAATTCCAATTTCTTCGCGAGAACTCTCCTTCCTTGCTCTTCCAGCATGGCCACAATTT
CAGCCTCGGCCCCGTTCCCTACTGTTACATTGGACCTAACTCAATCCCCGAACCCGTTGCAATTCCCAAAACCCCCTAACCAATTTCCAAATCCC
ATTTTCAAATCCCACCTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394899] SGN-U576773 Tomato 200607 Build 2 24 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196225 [Download][View] Facility Assigned ID: FA0AAD31AC09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.985 Expected Error Rate: 0.0027 Quality Trim Threshold: 14.5