EST details — SGN-E394900
Search information |
Request: 394900 | Match: SGN-E394900 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183869 | Clone name: TUS-43-E19 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183869 is on microarray TOM1 spot ID 1-1-6.1.18.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C10738 [cLEC-6-C14] | Trace: SGN-T23950 | EST: SGN-E202289 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183869 [TUS-43-E19] | Trace: SGN-T199687 | EST: SGN-E398361 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E394900 | Length: 232 bp (916 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394900 [] (trimmed)
AGCAATTCCCTCCCTCCAATATATCCAGGTTATCTTCAGGAGCACACAGACTTAAAATAAAAAGTACTAATGGTTCAAAGAGAGAATTTTTGGGG
CTAAAGGATGCACCTGATGTTCAGATTGCTGCACATACATTTACTTTCCGTGAGCTTGCAGCTGCTACTAATAACTTCAGGCCACAATCTTTTAT
AGGGGAAGGATGATCTTAGGGACGCCATTTCACGACTCCTCG
CTAAAGGATGCACCTGATGTTCAGATTGCTGCACATACATTTACTTTCCGTGAGCTTGCAGCTGCTACTAATAACTTCAGGCCACAATCTTTTAT
AGGGGAAGGATGATCTTAGGGACGCCATTTCACGACTCCTCG
Unigenes |
Current Unigene builds | |||||
[SGN-E394900] | SGN-U584760 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196226 [Download][View] | Facility Assigned ID: FA0AAD31AC10RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.950 | Expected Error Rate: 0.0102 | Quality Trim Threshold: 14.5 |