EST details — SGN-E394906

Search information 
Request: 394906Match: SGN-E394906
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183901Clone name: TUS-43-G3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183901 is on microarray TOM1 spot ID 1-1-6.3.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10851 [cLEC-6-H14] Trace: SGN-T24218 EST: SGN-E202557 Direction: 5' Facility: TIGR
Clone: SGN-C183901 [TUS-43-G3] Trace: SGN-T1792 EST: SGN-E378809 Direction: 5' Facility: Giov. Lab
Clone: SGN-C183901 [TUS-43-G3] Trace: SGN-T199688 EST: SGN-E398362 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394906Length: 397 bp (887 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394906 [] (trimmed) GATTTTTGCCAACTAAAAGGAACAAAAGAATGAAGCAAATTTTCAATGAAGTAAGAACACTGATACTAGAAATTATCAATAAAAGAATGAGGATG
ATTGAAGCTGGAGAATCACATGATGATTTATTGGGTATATTATTGTCATCCAATTTAAAAGAAATTCAACAACATGGGAATAAGAAATTTGGTAT
GAGCATTGATGAGGTGATTGAAGAATGTAAATTGTTTTATTTTGCTGGCCAAGAGACTACTTCAACTTTACTTGTATGGACAATGATTTTACTAA
GCCAACATCCTAATTGTTAAGATAGAGCTAGAGAAGAACTTTTACAAGTGTTTGGGAATAATGAAGTTGACTATGACAAGTTGAATCAACTAAGA
GTAGTGACTATGCATCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394906] SGN-U578818 Tomato 200607 Build 2 80 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196232 [Download][View] Facility Assigned ID: FA0AAD31AD02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.903 Expected Error Rate: 0.0023 Quality Trim Threshold: 14.5