EST details — SGN-E394936
Search information |
Request: 394936 | Match: SGN-E394936 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C183997 | Clone name: TUS-43-K3 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183997 is on microarray TOM1 spot ID 1-1-6.3.19.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C14731 [cLEC-8-G20] | Trace: SGN-T25173 | EST: SGN-E200084 | Direction: 5' | Facility: TIGR |
Clone: SGN-C183997 [TUS-43-K3] | Trace: SGN-T199693 | EST: SGN-E398367 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E394936 | Length: 585 bp (865 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394936 [] (trimmed)
CATGGATACCATCGATCTTTTTCTCTATCTTTTTCTCTCTGTTTTCACCTTTTATCTCCTCCGGTGTATGGCGGCGGCCCATCTTCGCGGGCGTA
AAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTC
ATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTT
TATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAA
GTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAAATCGATTGGTTAGG
CTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACCGAGGCTAAAAAAATAACGTTTAATCTAACAGTGAAGCAGTTGATGAGTTTTG
ATCCATGTGAGTGGA
AAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTC
ATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTT
TATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAA
GTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAAATCGATTGGTTAGG
CTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACCGAGGCTAAAAAAATAACGTTTAATCTAACAGTGAAGCAGTTGATGAGTTTTG
ATCCATGTGAGTGGA
Unigenes |
Current Unigene builds | |||||
[SGN-E394936] | SGN-U564608 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196262 [Download][View] | Facility Assigned ID: FA0AAD31AF02RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.980 | Expected Error Rate: 0.0087 | Quality Trim Threshold: 14.5 |