EST details — SGN-E394954

Search information 
Request: 394954Match: SGN-E394954
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180416Clone name: TUS-34-E22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180416 is on microarray TOM1 spot ID 1-1-3.1.19.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C29307 [cLEF-50-M9] Trace: SGN-T62687 EST: SGN-E249179 Direction: 5' Facility: TIGR
Clone: SGN-C180416 [TUS-34-E22] Trace: SGN-T196279 EST: SGN-E394953 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394954Length: 616 bp (819 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394954 [] (trimmed) ATCACGACCATTTTTGGGAAGAAATTTGTCAACAACAAGAAGATATTTGATGCATTTAGATAATCTCATATTTCTCAATCTTTGAGGTAAAAAAA
AAGATATCTTCCTTTTCTCAATCTCGCAAGTTGTCAGATTCTTGAATTTTTAGCATATTGGGGTGGTTGTTTTGGAACAATTAGTTGTTGTTTTC
AAGATCAGGGAAAAAATATTATCTGGGGGAAACGGTTGTAAACCCTACTTCTTTCGATTTGGGGAAAATATTGGGGAATTTGAGTCCGACCCAGA
TGACATGAGGATTGGGAGGAGTTAATTTTTATTGAGATTTGATTGCCCATGTATGGATCGATCATTGTCGACTTGGGTAATCTTCATATTGGGGA
TCTTCTTCTGTTTATTTAGTCTTCCTGTGCAGTCGCAGGACAATGTGAATTCCCCTAACTTACAACCGCCGCCGCCTCCACCACCGCCACCACCA
CCTCCACCTCCACCTCCGCCTCCCCCACCTTCACCATTGGCTCCTCCACCTCCTCCACCCAATCAAAGAGCCCCTCCGCCACCTCCTCCACCCAA
TCAAAGAACCCCTCCGCCACCTCCTCCCCAAAATAAAACCTCAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394954] SGN-U567460 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196280 [Download][View] Facility Assigned ID: FA0AAD22BC11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0027 Quality Trim Threshold: 14.5