Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E395044

Search information 
Request: 395044Match: SGN-E395044
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182830Clone name: TUS-40-J12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182830 is on microarray TOM1 spot ID 1-1-5.2.5.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
No additional reads found.
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395044Length: 565 bp (884 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E395044 [] (trimmed) GAAAGGTTGGGACGCGGTATTGTTACTGATGCCATAACTACCCCAGTGGTTAACACATCTGCTTACTTCTTCAACAAAACTTCTGACCTTATTGA
TTTTAAGGAGAAAAGACGTGCAAGTTTTGAATATGGCCGCTATGGGAACCCCACTACTGTTGTTTTGGAGGAGAAAATTAGTGCACTTGAGGGTG
CTGAATCAACCTTGATAGTGGCATCTGGAATGTGTGCTAGTACTGTCATGTTCCTGGCCTTGGTTCCTGCTGGTGGGCATATTGTTACTACTACA
GACTGCTACAGGAAGACACGTGTTTTTATTGAGACAATATTACCTAAAATGGGAATTACGGCCACAGTTATTGATCCAGCAGATATGGGAGCTTT
GGAGTTAGCATTAAATCAGAAGAAAGTGGATCTTTTCTTTACTGAGTCTCCAACAAATCCATTCCTGAGATGTGTTGACATTGAGCTGGTTTCAA
AGCTTTGCCGTGAAAAAGGAGCCTTGGTTTGCATAAAATGGAACATTTTGCACTCCTCTTAACCAAAAGGCCCTTGCTCTAGGGGCTGAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395044] SGN-U578164 Tomato 200607 Build 2 105 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196370 [Download][View] Facility Assigned ID: FA0AAD28DE06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0033 Quality Trim Threshold: 14.5