EST details — SGN-E395070

Search information 
Request: 395070Match: SGN-E395070
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180861Clone name: TUS-35-H11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180861 is on microarray TOM1 spot ID 1-1-6.4.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65883 [cLEN-11-P17] Trace: SGN-T89657 EST: SGN-E274630 Direction: 5' Facility: TIGR
Clone: SGN-C180861 [TUS-35-H11] Trace: SGN-T197707 EST: SGN-E396381 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395070Length: 659 bp (853 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395070 [] (trimmed) GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAA
ACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACACTGTAGATTTCTTCAACCAGGTGAATCTGCTT
TATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGAGTATAGGTGGGCTGATGGTGTACAAAT
CAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAA
GGCTTGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCAT
TTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGAATTTGGGTTGATTGACAA
AAAGGAGCTAGCTCCCCTCCAAGATCTCATAAATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395070] SGN-U580589 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196396 [Download][View] Facility Assigned ID: FA0AAD23CD06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0034 Quality Trim Threshold: 14.5