EST details — SGN-E395227

Search information 
Request: 395227Match: SGN-E395227
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184678Clone name: TUS-45-G12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184678 is on microarray TOM1 spot ID 1-1-5.3.14.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C83433 [cLET-24-L12] Trace: SGN-T108684 EST: SGN-E296167 Direction: 5' Facility: TIGR
Clone: SGN-C184678 [TUS-45-G12] Trace: SGN-T196552 EST: SGN-E395226 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395227Length: 307 bp (892 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395227 [] (trimmed) CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCC
GCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAATTGTTCTTGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAAG
AAAGGGAAAGGGTGAATCGTACTTGGAAATGAGAAAATCATTGAAGGCACCATCAGTACCATCCATCATGTCAAGCCCACTACCAGTGGATTTGG
ATGACGAGCTACTGACCACAGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395227] SGN-U578821 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196553 [Download][View] Facility Assigned ID: FA0AAD33BD06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0332 Quality Trim Threshold: 14.5