EST details — SGN-E395243
Search information |
Request: 395243 | Match: SGN-E395243 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C184826 | Clone name: TUS-45-M16 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184826 is on microarray TOM1 spot ID 1-1-1.1.14.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C85745 [cLET-40-G1] | Trace: SGN-T110303 | EST: SGN-E295070 | Direction: 5' | Facility: TIGR |
Clone: SGN-C184826 [TUS-45-M16] | Trace: SGN-T198635 | EST: SGN-E397309 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E395243 | Length: 392 bp (866 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E395243 [] (trimmed)
TGAGCACGGATTTGTGTACCGTGAGAACCATAAGTCACCAGGATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTTGGGTGCA
CTGATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAA
GTGCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGG
GAAGCTTGTTTGAATCCTCCTTAAAGTTTTTCTCTGGAGAAACTGTAGTAATTTTACTTTGTTGTGTTCCCTTCATCTTTTGAATTAATGGCATT
TGTTTTAATACT
CTGATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAA
GTGCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGG
GAAGCTTGTTTGAATCCTCCTTAAAGTTTTTCTCTGGAGAAACTGTAGTAATTTTACTTTGTTGTGTTCCCTTCATCTTTTGAATTAATGGCATT
TGTTTTAATACT
Unigenes |
Current Unigene builds | |||||
[SGN-E395243] | SGN-U578438 | Tomato 200607 | Build 2 | 819 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196569 [Download][View] | Facility Assigned ID: FA0AAD33BG08RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.960 | Expected Error Rate: 0.0012 | Quality Trim Threshold: 12.5 |