EST details — SGN-E395443

Search information 
Request: 395443Match: SGN-E395443
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173646Clone name: TUS-16-K20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173646 is on microarray TOM1 spot ID 1-1-5.3.18.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4083 [cLEC-23-H9] Trace: SGN-T28317 EST: SGN-E206358 Direction: 5' Facility: TIGR
Clone: SGN-C173646 [TUS-16-K20] Trace: SGN-T196768 EST: SGN-E395442 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395443Length: 660 bp (867 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395443 [] (trimmed) CAGATTCTCTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTG
GTCGTATCTTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGC
TTGCCAAGAATGGGGTTTCCTACAGGTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGTTATTCAATTGTTCAAAC
TTCCAATGGAAGAAAAGAAGAAACTGTGGCAACAGAAAGACAGCTTTGAAGGTTTCGGGCATATGTTTGTTGTATCGGAGGAGCAGAAGCTTGAT
TGGAGTGACATGTTTGGCATAATAAATCTTCCTCCTCATATCCGCAAAGTGGACTTGTTTCAGAAGTTGCCCTCGAAGCTCAGGTGGCCATCTCC
TTACTCTCTCTCAGCACATGCTTACTCGACGCCCTTACTTGTCTTTCTTTTGTATAAGAAAAGTCAAGAAATCGACTTTGTTCAGTTATCTCTAC
TAGTTTATGAACTATTTAAGCAGTAAACTACTCTATCCAACGGTATCAACCATTTCTTGATATTTAAATTCGTCCCACAGACCATTTTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395443] SGN-U565164 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196769 [Download][View] Facility Assigned ID: FA0AAD4BF10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0034 Quality Trim Threshold: 14.5