EST details — SGN-E395620

Search information 
Request: 395620Match: SGN-E395620
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173622Clone name: TUS-16-J20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173622 is on microarray TOM1 spot ID 1-1-5.2.18.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4004 [cLEC-23-E13] Trace: SGN-T28238 EST: SGN-E206279 Direction: 5' Facility: TIGR
Clone: SGN-C173622 [TUS-16-J20] Trace: SGN-T1286 EST: SGN-E378498 Direction: 5' Facility: Giov. Lab
Clone: SGN-C173622 [TUS-16-J20] Trace: SGN-T196947 EST: SGN-E395621 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395620Length: 489 bp (873 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395620 [] (trimmed) TTTTGAATGTTCAAAAAGGATGAAACACACCACAATTTTCAATATTAATCAAAATCAAAATATTTGTAAAACATAAATGATTAAAGTTAATTAAC
ATCAATCCAGTTAACTCCTAAGTCAAGTCTTCAGTACTGCTTTCATCTCCTTCAATTAAATCTCCTTGATAAGCCGCTTGTGAGGAAGTACTATT
TTCTCTTGGAGGAGGAACAAATAATGCAGCTAGTATGTTCCGATCAATTAATCCTGCATTTTGAAGTTGTGCAATTACTTTTGTGATAGCTTGTT
GTCGCATAGTTTTATTTTGTTCCTCCATCCGTTTCTCCGTTATTTTGCATTTGTTGAACTACATCATCTGTGGCCTTTAAAGAATGGTCAAAATT
TCCAGGTTTTATTTTCAATGCAGTCTTTGTAACCCCCACTCCATACGGTATGAAACGTACCGGATGTTCATGACCCATAACGGAATTTTACTATT
TGTGTTTTCTTCAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395620] SGN-U564006 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196946 [Download][View] Facility Assigned ID: FA0AAD4DE10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.924 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5