EST details — SGN-E395840

Search information 
Request: 395840Match: SGN-E395840
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174136Clone name: TUS-17-P6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174136 is on microarray TOM1 spot ID 1-1-3.4.17.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7085 [cLEC-37-M10] Trace: SGN-T31212 EST: SGN-E208221 Direction: 5' Facility: TIGR
Clone: SGN-C174136 [TUS-17-P6] Trace: SGN-T197167 EST: SGN-E395841 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395840Length: 605 bp (850 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395840 [] (trimmed) GATAAAGAGTAGTTTTATTTATTAATTTGATAGTATTATTAATGTAACATAGGAAGATGAGAACTTGCATATGCAAAGTTCACTTATTTAAATTT
TTTTTTAAAAAGGTTCGTACGTGCATAATAATTTCATAAGCACGACGATACATTTATTTATTTATTTATTAACCCCTTGGAAATTAATGAGGCAG
AGTGGAGGATACGTAGTTTAACAAGTGAAGCCAGTAGGATATTTCTTTCCACATGTGTTTAGTATGAGGCTCAGAGAGAGTGGTACATTCAAATT
AATTCCCAGCACATTTGCTTTTATGGCTGTGCACAAGCAAACCGCGGCCTCTAGGTCCGTCAGTCCCTGGATCAAACTGCAGCATGGCAAAGTTG
GTGGAGACCCGACTATTACATTCACCAAATTAAGTATATTAGCACACACACCAAGTTTCAAAGTATCTATTGAGCATGTTTGTTGAGAACCAACG
CAATTTCCAGTATCATTGGTTCCACTTACAACAGCAAACAACAGGAGATTCAGTGATAGGAAAAGGGGTACTGAAGACTGACTTGCAATTGTTTT
GGAAGCCATATTCAAATCTAGAGAATATTAATCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395840] SGN-U582797 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197166 [Download][View] Facility Assigned ID: FA0AAD5DH03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0025 Quality Trim Threshold: 12.5