EST details — SGN-E395900
Search information |
Request: 395900 | Match: SGN-E395900 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C174247 | Clone name: TUS-18-D21 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174247 is on microarray TOM1 spot ID 1-1-4.4.16.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C7448 [cLEC-38-P22] | Trace: SGN-T31754 | EST: SGN-E209219 | Direction: 5' | Facility: TIGR |
Clone: SGN-C174247 [TUS-18-D21] | Trace: SGN-T197225 | EST: SGN-E395899 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E395900 | Length: 655 bp (870 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E395900 [] (trimmed)
TTGGACTGCCTGATATAAGAGGAAGAGAAGAAATATTGAAAGTTCACAGTAACAACAAGAAGCTTGACAAAGATGTGTCTCTAAGTGTTATTGCA
ATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTC
AAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATG
AGGTTGGACATGCTGTCTGCGCGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACA
TGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAAT
AATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTC
TTGTTGCACCTACTAAAGAAAACAACATAATCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTAC
ATGAGAACACCAGGATTCAGTGGTGCAGATCTTGCAAACCTGATGAATGAAGCTGCCATTCTAGCTGGAAGGAGAGGAAAAGATAAGATTACCTC
AAAAGAGATAGATGATTCCATCGATAGAATTGTCGCTGGAATGGAAGGAACTACCATGACAGATGGAAAGAACAAGATTCTGGTAGCATACCATG
AGGTTGGACATGCTGTCTGCGCGACATTGACCCCTGGCCATGATGCAGTACAGAAAGTCACATTGATCCCAAGAGGTCAAGCTCGCGGTCTTACA
TGGTTCATTCCTGGTGAAGATCCAACCTTAATCTCTAAGAAGCAACTCTTTGCTAGAATAGTGGGAGGCTTAGGAGGTAGAGCAGCAGAGGAAAT
AATTTTTGGTGAACCAGAAATCACTACTGGTGCAGCAGGAGACTTGCAACAAATAACTCAAATAGCAAGACAGGTATTCACTCAAGCACATTTTC
TTGTTGCACCTACTAAAGAAAACAACATAATCGAATACTCACAAGTTTTCACTTGTCAATATTCGCAACCTGAGCAGATGGTTAC
Unigenes |
Current Unigene builds | |||||
[SGN-E395900] | SGN-U564706 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197226 [Download][View] | Facility Assigned ID: FA0AAD6CB11RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.966 | Expected Error Rate: 0.0023 | Quality Trim Threshold: 14.5 |