EST details — SGN-E396052

Search information 
Request: 396052Match: SGN-E396052
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174482Clone name: TUS-18-N16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174482 is on microarray TOM1 spot ID 1-1-1.2.16.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C174482 [TUS-18-N16] Trace: SGN-T197379 EST: SGN-E396053 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396052Length: 679 bp (841 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396052 [] (trimmed) AGAAACTAAACAAATATACATTACTCGTTAATTTGAATTAGTCGGATCAACAAACTTTATAAAAAGCCTATCCAAACTAAAACTTACATTGAGAA
TTTTTGCTCCGTTTGATCTTCTTGAATTTCAGAAAGAAGTAGAAGATATTCTTCATATACTTTTTCCACCATATTATCATTCATTTCCACTTTGT
TTGAAAAATTGCAGCTTTCTCCCATAAGAAATTCATCATAAAATCCACCCCCTTCAAGTAATTCATCAAAATCTAATTCCCTTGGAAATAACTTC
ACCTCTTTTTCCCTGTCTTTTCCATCATCAACTTTTTCAAAATTACTATTTGAGGAACAAGTAGTAGTACTCAATGTATCATTTTCAAAACTATT
GTTCCTTGAAATCCCACAAGAAATCCTTATGGGCTTTGGTGCAAATACTTTTATCTTCTCAACTTGTGCAATTTGACCCTTCAACTTCTCATCAT
TGCTTTTCTTCCCCACTTCTTTTCTTGATTTCTCCTTTTTGGTTTGTTTTCTTGATTTCTCCTTTAATTTGGTCAAATTCTTGTGGGGTTTTGGT
TCAATTCCTGTGCTTCTGAGCTTCTTGGTCAAATGCGTATTCCAATAATTCTTGATTTCATTATCTGTTCGACCAGGTAATCGTCCGGCAATTAA
TGACCAACGATTAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396052] SGN-U574376 Tomato 200607 Build 2 10 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197378 [Download][View] Facility Assigned ID: FA0AAD6DG08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.916 Expected Error Rate: 0.0020 Quality Trim Threshold: 14.5