EST details — SGN-E396122
Search information |
Request: 396122 | Match: SGN-E396122 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C174841 | Clone name: TUS-19-M15 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C174841 is on microarray TOM1 spot ID 1-1-2.1.15.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C23661 [cLED-6-A14] | Trace: SGN-T50227 | EST: SGN-E233241 | Direction: 5' | Facility: TIGR |
Clone: SGN-C174841 [TUS-19-M15] | Trace: SGN-T197449 | EST: SGN-E396123 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E396122 | Length: 505 bp (897 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396122 [] (trimmed)
CCGGGGAACCCAACCCCATTTTATCCAAACCCAAAAAAATTTTTGGGTTCCTTATTAGAAAACATCCCCCAACCCCATTTTTTACTTTAAAAAAT
ATTCGGGAAACCCGTTAAATTTTTACGGATCACCAAAAAACCCTTTTTGGCCCCCCCCCAAAGGAAAAAAACCCTTGGAAAAAAAACCAAACGGA
AAAAAACCCCGGAAACCCCCCCCCAAACCAATATAATTCCCAATTACGGGGGAAGGAAAATAACCAAAAAAAAAAGGGGTACCCCAAAACAAACT
GGAAAATTTTCCGGAAAAACTTTGCCCTTCGGGCAAAGTTTAAAAATTTGGACAGCAGGATTTTTTCAAAAAATTTATACCAACCCCGAAGGAAA
TGCTATACTTGTTAATTTATAAAAATTTGGCTTCGGGAAAATAAATATGGAAATCATCACAAAAACCTTTGAATTTTTTGTAAAAAAATAAACCT
GCTTTATTTGTTCAACCCCCAAAAAAAATG
ATTCGGGAAACCCGTTAAATTTTTACGGATCACCAAAAAACCCTTTTTGGCCCCCCCCCAAAGGAAAAAAACCCTTGGAAAAAAAACCAAACGGA
AAAAAACCCCGGAAACCCCCCCCCAAACCAATATAATTCCCAATTACGGGGGAAGGAAAATAACCAAAAAAAAAAGGGGTACCCCAAAACAAACT
GGAAAATTTTCCGGAAAAACTTTGCCCTTCGGGCAAAGTTTAAAAATTTGGACAGCAGGATTTTTTCAAAAAATTTATACCAACCCCGAAGGAAA
TGCTATACTTGTTAATTTATAAAAATTTGGCTTCGGGAAAATAAATATGGAAATCATCACAAAAACCTTTGAATTTTTTGTAAAAAAATAAACCT
GCTTTATTTGTTCAACCCCCAAAAAAAATG
Unigenes |
Current Unigene builds | |||||
[SGN-E396122] | SGN-U604485 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197448 [Download][View] | Facility Assigned ID: FA0AAD7AG08FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.854 | Expected Error Rate: 0.0284 | Quality Trim Threshold: 14.5 |