EST details — SGN-E396280

Search information 
Request: 396280Match: SGN-E396280
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185532Clone name: TUS-47-K2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185532 is on microarray TOM1 spot ID 1-1-7.3.10.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C75516 [cLES-14-G15] Trace: SGN-T100499 EST: SGN-E286678 Direction: 5' Facility: TIGR
Clone: SGN-C185532 [TUS-47-K2] Trace: SGN-T192195 EST: SGN-E390869 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396280Length: 301 bp (850 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396280 [] (trimmed) CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGT
TTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCC
TTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGA
TTTTTCTATTCCAATG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396280] SGN-U578708 Tomato 200607 Build 2 218 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197606 [Download][View] Facility Assigned ID: FA0AAD35BF01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0000 Quality Trim Threshold: 12.5