Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E396297

Search information 
Request: 396297Match: SGN-E396297
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185409Clone name: TUS-47-E23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185409 is on microarray TOM1 spot ID 1-1-2.1.9.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C71992 [cLER-19-M9] Trace: SGN-T96560 EST: SGN-E284988 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396297Length: 587 bp (861 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396297 [] (trimmed) CAGATTGGCTATGGCTTTTCAAGGTTCATTTCGGGCAATTAGCCTTTTGATATTTTTGGCCAATTTTTTGTCTATGATTGAGTTTTCTAAGGCTG
CAAATGCAAAAGTGCCAAGCCATACTATATCTAATCCATTTAATCGTACCATATTTTCACCTGATTTTCTTTTTGGAGCTTCCACTTCTTCCTAT
CAGTATGAAGGTGCATGGAATGAAGATGGCAAAGGACCAAGTATTGTGGATACTTTCGTTCACACTCATCCTGAAAAAATATTGGACCGTAGCAA
TGGAGATATAGCTCTGGACTTTTATCATCGTTACAAGGAGGACGTGAAACTAGCAAAATTTGAAGGACTGGATGCTTTCAGGATATCTATTGCAT
GGACGAGAATTTTACCAAAGGGTTCGGTTAAAAAGGGAATAAATCAAGCTGGTATTGACTACTACAACAGTCTCATAAATGAGATTGTAGCCCTT
GGTATTAAACCTCTCGTGACACTTTTTCATTGGGATCTTCCTCAAGCCCTTGAAGATGAATATCTTGGCTTTCTAAGCCCTAAGGTCGTAGATGA
TTACGTAGATTTTGTGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396297] SGN-U580766 Tomato 200607 Build 2 69 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197623 [Download][View] Facility Assigned ID: FA0AAD35AC12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.964 Expected Error Rate: 0.0021 Quality Trim Threshold: 14.5