EST details — SGN-E396380

Search information 
Request: 396380Match: SGN-E396380
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180859Clone name: TUS-35-H9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180859 is on microarray TOM1 spot ID 1-1-8.4.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65868 [cLEN-11-N4] Trace: SGN-T89685 EST: SGN-E274658 Direction: 5' Facility: TIGR
Clone: SGN-C180859 [TUS-35-H9] Trace: SGN-T199715 EST: SGN-E398389 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396380Length: 317 bp (936 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396380 [] (trimmed) GCCAATATCAATAATGATATTAAAATGTCAAACTTTTAGACTACATACTTATTATAGAATGGTAAAAATACATTTTTATCACACCATACTCATTA
ATTTCCTATTAAAAATAGGTTAAAAGCAAAAACTGAAAGAAGATGATTAGTAAGGCACAATAATAGAATCTATGAGATCTTGGAGTGGAGCTAGC
TCCTTTTTGTCAATCAACCCAAATTCATGGGTGAAGAGAATGAAATGCTTGAAACACGTATTCAAATGTGCTTCCTCCTTAAGACTCACGATCTT
CTGAAAATGGGAATGATAAATATGTGCATATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396380] SGN-U580589 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197706 [Download][View] Facility Assigned ID: FA0AAD23CD05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.917 Expected Error Rate: 0.0064 Quality Trim Threshold: 14.5