EST details — SGN-E396438
Search information |
Request: 396438 | Match: SGN-E396438 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185493 | Clone name: TUS-47-I11 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185493 is on microarray TOM1 spot ID 1-1-6.1.9.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C79204 [cLES-8-C18] | Trace: SGN-T99146 | EST: SGN-E288626 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185493 [TUS-47-I11] | Trace: SGN-T192074 | EST: SGN-E390748 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E396438 | Length: 463 bp (896 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396438 [] (trimmed)
CATCACCCGGATCAACAATTTAACAAAAATGTAAAATACAGAAGATACCTTAAATGTAGACTTGTTTGAGCAAAATGTCACAATCTCAATGAAAA
TTCAAAGCCATAATTGTGTCAAAGTTTAAAGAATTTTATAGCTAACTCAAAAAGATCATGTATTAACTAATAAACTCAGTTCCTCAATTGTCAAA
ATAAGGATAGAGACTTCACTTCTTCTTTTCACCACCACCGGTTGCCCTCATCTTACGGAGAACGCTGGACATCTCCTCTCTCTTCTTCTTTGCCC
TCTTGTGGGTACCCAACTTCCTCTTGGCTACCTTCAATGCACGCTTGTCCTTACCATTTTTTTTAATCTCAATAATCCTCTTCTCATATGGAGCA
AATCCAGCAACTTCTCTGATGAGGCTCCTGACGAAGTGGATTCTTTTGCTGGTTTTCCCATTGCGGCCGAAGGGGGGGGGGGG
TTCAAAGCCATAATTGTGTCAAAGTTTAAAGAATTTTATAGCTAACTCAAAAAGATCATGTATTAACTAATAAACTCAGTTCCTCAATTGTCAAA
ATAAGGATAGAGACTTCACTTCTTCTTTTCACCACCACCGGTTGCCCTCATCTTACGGAGAACGCTGGACATCTCCTCTCTCTTCTTCTTTGCCC
TCTTGTGGGTACCCAACTTCCTCTTGGCTACCTTCAATGCACGCTTGTCCTTACCATTTTTTTTAATCTCAATAATCCTCTTCTCATATGGAGCA
AATCCAGCAACTTCTCTGATGAGGCTCCTGACGAAGTGGATTCTTTTGCTGGTTTTCCCATTGCGGCCGAAGGGGGGGGGGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E396438] | SGN-U580851 | Tomato 200607 | Build 2 | 70 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197764 [Download][View] | Facility Assigned ID: FA0AAD35AE06FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.938 | Expected Error Rate: 0.0125 | Quality Trim Threshold: 14.5 |