EST details — SGN-E396528

Search information 
Request: 396528Match: SGN-E396528
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176647Clone name: TUS-24-H21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176647 is on microarray TOM1 spot ID 1-1-4.4.9.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27184 [cLEF-42-M4] Trace: SGN-T60594 EST: SGN-E247550 Direction: 5' Facility: TIGR
Clone: SGN-C176647 [TUS-24-H21] Trace: SGN-T193383 EST: SGN-E392057 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396528Length: 618 bp (826 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396528 [] (trimmed) AAAGAGAATCAAGACGGATATTATAGATATCGCCACACATGTTTAAAGTACAGAACATTTACAAGCATATATATGTTTGATGAAATTTTCTACTT
TACAGTAATCTTATTCCACAACATATGTATAAGAATAGTAATTATAATATGTTAATCTTATGATAATTTGATGCAACACATATATATAAAGATGA
TCTTATATTTGATTTGAAACCCTGTAGTAATTTGTCAAAGTCTTCCCATCCAACTCCTTTGAAAAGAACCTCCCCATGTAATCCGTGTACATGAA
TTCGCGGTAAACTGCTGGCTTTTCATCTGATATCAGTTCAGGCAGAGGTCCAAATGAGTTCTCTCTTTGTCCTGGATTAAAGAAGATGGCAACTG
ATACGCGGGGTTCTTGGAAAGGGTTGGCTAGAACTCGGTGCACCACGCTCTTGTATTCATCATTCGATATTATCTGAAGAATATCACCAATATTA
ATCACAATAGCCCCCGGAATCGGCTTCAAATCCACCCAATCTTCCCCAAATTTCACTTGCAATCCACTCATTTCATTCTGCACCAACACCGTCAA
CACACCGGGATCCGTATGAGGCGTCCACCCTTTCGTCAACTCCGGCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396528] SGN-U570114 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197854 [Download][View] Facility Assigned ID: FA0AAD12CD11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5