EST details — SGN-E396628

Search information 
Request: 396628Match: SGN-E396628
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183926Clone name: TUS-43-H4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183926 is on microarray TOM1 spot ID 1-1-5.4.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7636 [cLEC-39-K4] Trace: SGN-T31942 EST: SGN-E208652 Direction: 5' Facility: TIGR
Clone: SGN-C183926 [TUS-43-H4] Trace: SGN-T198107 EST: SGN-E396781 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396628Length: 612 bp (877 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396628 [] (trimmed) GATTTTTGCCAACTAAAAGGAACAAAAGAATGAAGCAAATTTTCAATGAAGTAAGAACACTGATACTAGAAATTATCAATAAAAGAATGAGGATG
ATTGAAGCTGGAGAATCACATGATGATTTATTGGGTATATTATTGTCATCCAATTTAAAAGAAATTCAACAACATGGGAATAAGAAATTTGGTAT
GAGCATTGATGAGGTGATTGAAGAATGTAAATTGTTTTATTTTGCTGGCCAAGAGACTACTTCAACTTTACTTGTATGGACAATGATTTTACTAA
GCCAACATCCTAATTGGCAAGATAGAGCTAGAGAAGAAGTTTTACAAGTGTTTGGGAGTAATGAAGTTGACTATGACAAGTTGAATCAACTAAAA
GTAGTGACTATGATCTTAAACGAGGTCTTACGATTGTATCCAGCAGGATATATGATGACTAGAATGGTAAAAACAAAAACAAAGTTAGGAAATTT
GTGTTTACCAGGTGGTGTGCAACTTTTGTTACCAACAATATTGTTGCAACATGACACTAAAATATGGGGAGATGATGCAATGGAATTCAATCCAG
AGAGGTTTAGTGATGGAATATTAAAAGCCACAAAAGGACAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396628] SGN-U578818 Tomato 200607 Build 2 80 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197954 [Download][View] Facility Assigned ID: FA0AAD31DD02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.919 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5