Notice: Due to a regional power outage, SGN was briefly unavailable on Saturday, Feb 4. We apologize for the inconvenience.

EST details — SGN-E396686

Search information 
Request: 396686Match: SGN-E396686
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183885Clone name: TUS-43-F11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183885 is on microarray TOM1 spot ID 1-1-6.2.19.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4543 [cLEC-27-K19] Trace: SGN-T28820 EST: SGN-E204086 Direction: 5' Facility: TIGR
Clone: SGN-C183885 [TUS-43-F11] Trace: SGN-T198013 EST: SGN-E396687 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396686Length: 683 bp (894 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396686 [] (trimmed) AGGCTATATAATTTTGCTTACTAGAATTTACATTTCTTTCTAAGATAAGATACAAATGAAAATCCAGTTGTATATCTCACAACAAATGCAAAAAA
AGAGTCAAGATCGCATAACTGCTTATAATAGCATGTCAATTATGATTTATGAACCATTTTTCTAAATACTCAAAAGGCACGCTTAATAGTCCCTG
AGGTGATGCTCGAGCGCTTCAATGTCGTCATCAAAAAATAATTGATATTTCACTTTATCGTGGAAAGATCAATTTCTATCGAGGATCTAACATTG
TCATTGTCATTTCATTATTTGAACTTCCTGTTTGCATTCCTGAGTTATCTGAATCATGTACTGTTCTTTCCATGAAAAATCCTGGTTCTTTAGCT
TCTGCCAATAAACTCTCATTACCTAGCATTTGAACCACAGAAGACATGTTTGGTCTATCTTCAGGACATTGTTGAACACATAATAGTCCCACTTG
AATTGACCTTAAAACTTGAGAAATATGGCAAGATTCAGCTATCTTCTCATCAATTAGTTCCAAGGATCTATCTTCCTTGTAAAGCTTCCATGCGT
GACCGAGAAGGTTAAGGTTGTGATTTTGATGGACGAATCCTCTATTTCTCTTGCCACTCACTATCTCTTACACCAATACCCCCAAACTAACCACA
TCTGATTTTACCCGAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396686] SGN-U580172 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198012 [Download][View] Facility Assigned ID: FA0AAD31CC06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.946 Expected Error Rate: 0.0015 Quality Trim Threshold: 14.5