EST details — SGN-E396730
Search information |
Request: 396730 | Match: SGN-E396730 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C184067 | Clone name: TUS-43-N1 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184067 is on microarray TOM1 spot ID 1-1-8.2.19.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C5840 [cLEC-33-E24] | Trace: SGN-T30238 | EST: SGN-E206966 | Direction: 5' | Facility: TIGR |
Clone: SGN-C184067 [TUS-43-N1] | Trace: SGN-T198057 | EST: SGN-E396731 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E396730 | Length: 229 bp (889 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396730 [] (trimmed)
TTTACCTTTTTCTATATAAAACTCAGAAATACAAAAATATCTTAAATAACAGACTCTTGGAGACGAAGTGCATACTCCAGTTTCCACAACACATC
ACCCATTGATGGCCTATCTTCACTAGACAAAGCTAAGCATTTTACCGCTGTATCTCCAAACTTCCTGAGGGACTCTGGTCTTATTTTATCTGCAA
GATTGGGATCTACGATTTGTTCCCACTGTCCATTATTAT
ACCCATTGATGGCCTATCTTCACTAGACAAAGCTAAGCATTTTACCGCTGTATCTCCAAACTTCCTGAGGGACTCTGGTCTTATTTTATCTGCAA
GATTGGGATCTACGATTTGTTCCCACTGTCCATTATTAT
Unigenes |
Current Unigene builds | |||||
[SGN-E396730] | SGN-U577094 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T198056 [Download][View] | Facility Assigned ID: FA0AAD31CG01FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.963 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |