EST details — SGN-E396771

Search information 
Request: 396771Match: SGN-E396771
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183876Clone name: TUS-43-F2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183876 is on microarray TOM1 spot ID 1-1-7.2.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7172 [cLEC-38-B11] Trace: SGN-T31687 EST: SGN-E209152 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396771Length: 679 bp (866 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396771 [] (trimmed) GTTGAACAAAGTACGGCATACCAGCCATGGATTTGGTCTGCTGGGAATCATGAGATAGAGTACTTTCCATATATGGGGGAAGTAGTTCCATTCAA
ATCATTTCTATCTAGATACCCCACACCTTATCGAGCTTCAAAAAGCAGTAATCCCCTTTGGTATGCCATCAGGAGGGCATCTGCTCACATAATTG
TCCTATCAAGCTATTCCCCTTTTGTAAAATATACACCTCAATGGCATTGGTTGAAACAGGAATTTAAAAAGGTGAACAGAGAGAAAACTCCTTGG
CTTATAGTCCTTATGCATGTTCCTATCTACAACAGTAATGAAGCTCATTTCATGGAAGGGGAAAGCATGAGATCCTCCTATGAAAGATGGTTTGT
CAAATACAAAGTCGATGTGATCTTTGCTGGCCACGTCCATGCTTATGAAAGATCATATCGTATATCTAATATACACTACAATGTCTCGGGTGGTG
ATGCTTATCCCGTACCTGATAAAAAAGCTCCTATTTACATAACTGTTGGTGATGGAGGAAATTCAGAAGGTCTTGCTTCAAAATTTAGAGATCCC
CAGCCAGAATATTCTGCTTTCCGTGAAGCTAGCTATGGTCATTCGACTCTAGATATCAAGAATAAAACACATGCAATCTACCACTGAAACCGAAA
TGATGATGGAAATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396771] SGN-U572371 Tomato 200607 Build 2 54 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198097 [Download][View] Facility Assigned ID: FA0AAD31DC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.971 Expected Error Rate: 0.0074 Quality Trim Threshold: 14.5