EST details — SGN-E396976

Search information 
Request: 396976Match: SGN-E396976
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184371Clone name: TUS-44-J17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184371 is on microarray TOM1 spot ID 1-1-8.2.16.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C74483 [cLER-9-L4] Trace: SGN-T94002 EST: SGN-E278268 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396976Length: 629 bp (873 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396976 [] (trimmed) CCATTCAAGTACGAAGGGCATGAATTCATCTGGCAAGATGTTTGGCCTATGGGATGTCAGTACAATGGCCTACACCTGTGTTGTTGTAACTGTCA
ATTTACGTCTCCTTATGATGTGCAACACAATTACAAGATGGCATCACATTACCGTTGGAGGGAGCATATTATTATGGTTCATTTTTGTATTTATC
TACTCGGGTATCCACTTGCACAAAGAACAGGAGGGTATCTATTTAGTCATCATTGTTCTGATAAGCACATTATACTTCTACCTTGCGCTGCTTCT
CGTACCAGTTGCTGCACTTTTTGTTGACTTCCTATATCAGGGGGTACAAAGATGGTTTTCCCCATATGATTACCAAATTGTTCAGGAAATTCACA
AGCACGAAATCGACAACAGCAGGATTGGTTTATTAGAGATCCGTAACGAGCTTTCTCCAGATGAAGAAAGGAGATACGCCATAATGCACCTTCCT
GGACAGAGATCAAAACATACTGGTTTTGCTTTTGATTCACCCGGTTATGAGTCATTTTTCGCATCTCCGGCTGGGCGTGTTGGCACCTCAGAAGG
CTTGGGACGTTGCTTCGAAAGCAAGCATGATGAAATCACAACCAAAGGTACCTAAAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396976] SGN-U565325 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198302 [Download][View] Facility Assigned ID: FA0AAD32CE09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0107 Quality Trim Threshold: 14.5