EST details — SGN-E397006

Search information 
Request: 397006Match: SGN-E397006
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184471Clone name: TUS-44-N21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184471 is on microarray TOM1 spot ID 1-1-4.2.16.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C71418 [cLER-17-M4] Trace: SGN-T95849 EST: SGN-E282998 Direction: 5' Facility: TIGR
Clone: SGN-C184471 [TUS-44-N21] Trace: SGN-T198333 EST: SGN-E397007 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397006Length: 617 bp (856 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397006 [] (trimmed) AAAGAAAATTACATTCTCTTGAATTCAACACCTCAAATTTACAATATACACTCTTTCTAACAACATGTGAATAATTTACATATACAGATCAACCA
AAGATTTTAAAAAAAAAAAACAAGTATAGAGGAAAAAGAAATAAAATAAAACAAAGTTGAAAGTAATATTCAACCAAATACAAACTATTTTACCT
CCCTCCACCACACCAAAATTTTCCAATTAACTCCAAAAATCTAAGCTCAAATGCTTTGATCATATGCAGCGGTAGTGAATGTCGAGTTACCTTGA
GAAAAACTCGTGGATGGTAACGTTGTATTGTCTGATAAAACGTAATCATATGCTGCATTAATTTGTTCAGGCGCGCTACTTTTAATCTTGAAATC
CATGAAATCGGAAATCAAGCCTGGTTTTGTTATCTTATTGTCATTGACCTCCATCTCACCGTTTAGCATCTTGAGAATAGTAAACATGGATGGCC
GCAGCTTTAAGGCGTCTTGAGTGCATAGGAGCCCAATCTTCAAGTATCTGCAGGCCTGTTCAGCATCAAAATCCCCGTCTAGAGACGTGTCTACT
AGCATTACCAACTCGTTTCTTTCATAAAGTTGCCACGTCCTTTCAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397006] SGN-U570846 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198332 [Download][View] Facility Assigned ID: FA0AAD32CG11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0108 Quality Trim Threshold: 14.5