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EST details — SGN-E397139

Search information 
Request: 397139Match: SGN-E397139
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184593Clone name: TUS-45-C23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184593 is on microarray TOM1 spot ID 1-1-2.3.14.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C87847 [cLET-6-B12] Trace: SGN-T103861 EST: SGN-E291608 Direction: 5' Facility: TIGR
Clone: SGN-C184593 [TUS-45-C23] Trace: SGN-T198553 EST: SGN-E397227 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397139Length: 679 bp (822 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E397139 [] (trimmed) CGACGGTGAAAGAGGGGCAGCATTTGGCGGAGGACGAGCTTCAGCTCCTTTGTGAATATGTTAAGGAAATCCTGATAGAGGAGTCAAATGTGCAG
CCCGTCAATAGTCCAGTTACTGTTTGTGGAGACATCCATGGCCAGTTTCATGATCTAATGAAACTCTTCCAGACTGGAGGTCATGTACCTGATAC
AAATTACATTTTCATGGGAGATTTTGTTGACCGTGGATACAATAGTTTAGAAGTTTTTACAATTTTGTTGCTCCTTAAAGCAAGATACCCAGCCA
ACATTACTCTTTTACGTGGAAATCACGAGAGCAGGCAACTAACACAGGTCTATGGATTCTATGATGAGTGTCAAAGGAAGTATGGAAATGCGAAT
GCATGGCGGTACTGCACTGATGTTTTTGACTATCTTACTCTCTCGGCAATCATAGACGGAACAGTATTATGTGTCCATGGTGGACTTTCTCCTGA
TGTTAGAACAATTGATCAGATCAGAGTGATTGACCGTAATTGTGAAATTCCGCATGAAGGGCCTTTCTGTGACCTTATGTGGAGTGACCCCGAAA
ATATTGAAAACATGGGCAGTAAGTCCTCGAGGAGCAGGTTGGCTTTTTTGATCCAGGGTTACCTCTGAGTTTAATCACATTAATAAACTAGATCT
AATTTTGCCGGGCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397139] SGN-U570163 Tomato 200607 Build 2 28 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198465 [Download][View] Facility Assigned ID: FA0AAD33AB12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0055 Quality Trim Threshold: 14.5