EST details — SGN-E397218
Search information |
Request: 397218 | Match: SGN-E397218 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C184537 | Clone name: TUS-45-A15 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184537 is on microarray TOM1 spot ID 1-1-2.1.14.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C84916 [cLET-2-L10] | Trace: SGN-T102800 | EST: SGN-E291259 | Direction: 5' | Facility: TIGR |
Clone: SGN-C184537 [TUS-45-A15] | Trace: SGN-T1829 | EST: SGN-E378227 | Direction: 5' | Facility: Giov. Lab |
Clone: SGN-C184537 [TUS-45-A15] | Trace: SGN-T198453 | EST: SGN-E397127 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E397218 | Length: 646 bp (870 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E397218 [] (trimmed)
AATTAAACGATCTATTTATATTATTCCTTCAAATGTTTTAAACACTTTTTTTTTTTTTATAATTTTCTTCCTCTAATGCCTTCATTTGTAGTCCT
TATATGAATCTTCCGCGCACAAGTGAAAATTACATAATGAATATTATTCATTACAATTATTCACTATATATCGATTCTTTGTTATAATATACGTA
CATACTTACGTAAATACCTCTTACAAAATTTTTTCGTAAAATGTTCACTACTTGTACAAAATCATGATTAAGAACAGACCAAATTGAGATAACTA
AGATGAAGACGATCGTAATTTGACATGGAATTAAAAGGAAGAAAGATTAATTTGACATGATGAAGATGATGACGATGACGAAGAAGATGATTAGC
TGGAAAGGCTAAAACGAACTTGAACATCGAGATCCTTCAACCAAGTTTGGCCTTGTAAGAAGGATTCAACTGTGTAATTCAACGCGATATCCTTA
CTTATTGTGCCTTGATATCCAGCCCATTTAACTCTGGAGCCCGTTCCAGATCCAGCTCCTCTGTTGCTATATTCCCCGAAATACAGAGTGCTTAA
TGCATAGTCCCCGTTTGTAGCCTCCCATCCTTCTGGATCAATTACGTCAGTAATGTCCGTTTCCATTAAAATCGTC
TATATGAATCTTCCGCGCACAAGTGAAAATTACATAATGAATATTATTCATTACAATTATTCACTATATATCGATTCTTTGTTATAATATACGTA
CATACTTACGTAAATACCTCTTACAAAATTTTTTCGTAAAATGTTCACTACTTGTACAAAATCATGATTAAGAACAGACCAAATTGAGATAACTA
AGATGAAGACGATCGTAATTTGACATGGAATTAAAAGGAAGAAAGATTAATTTGACATGATGAAGATGATGACGATGACGAAGAAGATGATTAGC
TGGAAAGGCTAAAACGAACTTGAACATCGAGATCCTTCAACCAAGTTTGGCCTTGTAAGAAGGATTCAACTGTGTAATTCAACGCGATATCCTTA
CTTATTGTGCCTTGATATCCAGCCCATTTAACTCTGGAGCCCGTTCCAGATCCAGCTCCTCTGTTGCTATATTCCCCGAAATACAGAGTGCTTAA
TGCATAGTCCCCGTTTGTAGCCTCCCATCCTTCTGGATCAATTACGTCAGTAATGTCCGTTTCCATTAAAATCGTC
Unigenes |
Current Unigene builds | |||||
[SGN-E397218] | SGN-U582729 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T198544 [Download][View] | Facility Assigned ID: FA0AAD33AA08FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.944 | Expected Error Rate: 0.0144 | Quality Trim Threshold: 14.5 |