EST details — SGN-E397220

Search information 
Request: 397220Match: SGN-E397220
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184571Clone name: TUS-45-C1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184571 is on microarray TOM1 spot ID 1-1-8.3.14.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C85623 [cLET-3-J14] Trace: SGN-T103233 EST: SGN-E289562 Direction: 5' Facility: TIGR
Clone: SGN-C184571 [TUS-45-C1] Trace: SGN-T198457 EST: SGN-E397131 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397220Length: 669 bp (876 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397220 [] (trimmed) AGCATTAGCAAGTCTATGAGTATCTTATTTAATTGTAGTCTTAAGATTAAACATAAACTGGTAGAAGCAACACAACAACCAATTACGGTTAACCC
TAGAACTCGACCCGACACGACCCGACCAAAGCAGTAGAGATAGTTTGAAATTAAAAACAAAGCCTAAAACGGCGACTCAAATACATAAAAGACTG
ATAAAACTAGATCATCATCATCATCAGATCTAGAGTTGACCGCAGTCAGCAATAACCACAGGCTTGGAGCACCTTCCAGAGCTAGATCCAACAGC
CTCTGCCTTCTTAATCACATCCATGCCTTCAACAACTTGTCCAAACACGACGTGCTTTCCGTTGAGCCACTCAGTCTTAGCGGTACAGATGAAAA
ACTGAGAACCGTTGGTTCCAGGTCCAGCATTAGCCATGGAGAGGATTCCAGGGCCGGTGTGCTTCTTAACGAAGTTCTCATCGTTGAATTTGGCT
CCATAGATCGACTCTCCTCCGGTCCCGTTTCCGGCGGTGAAATCACCTCCTTGACACATGAACCCTGGGATCACACGGTGGAAGGTTGAGCCCTT
GTAGTGCAAAGGCTTCCCCATCTTTCCAACACCTTTCTCACCGGTACAAAGAGCTCGGAAGTTCTCACCGGTTTTGGGAGTGGTATCGGCGAAGA
CCTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397220] SGN-U577630 Tomato 200607 Build 2 444 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198546 [Download][View] Facility Assigned ID: FA0AAD33AB01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0023 Quality Trim Threshold: 14.5