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EST details — SGN-E397886

Search information 
Request: 397886Match: SGN-E397886
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180352Clone name: TUS-34-C6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180352 is on microarray TOM1 spot ID 1-1-3.3.19.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C28634 [cLEF-48-I11] Trace: SGN-T62171 EST: SGN-E245682 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E397886Length: 576 bp (856 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E397886 [] (trimmed) CAAATCTATTGTCATGATGGGAGATAAGCTCTTCAGTTCCCACCAAGATCATAAAATCCGAGTATGGAAAATTGACAATGAGACACCTAATAGAA
ATTACAAGAGCATTGCCACCTTACCAACGATCAACGATCGTTGCGTGAAGCTATTTTGGACAAGGAACTACGTACAAGTTCGAAGACACAAGAAA
TGCACATGGGTACATCACGTAGACACGGTGTCAGCATTAGCCTTATCGAAAGATGGCTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTTAA
GATTTGGAGAAGTTCAGATTTCAAATGCCTAGAATCAGTATGGAATGCACATGACGACGCGATCAACTCAATAGTTGTATCGAATAATGGAGATG
TTTACACTGGTTCAGCAGACAAGAAGATCAAAATATGGACTAAACAACAAGAAGGGGGTTCTAATAAACACACTCTTATGACTGCACTAGAGAAG
CATAAATCAGCAGTGAATGCTTTGGCTCTTAGTAGAGATGGTTGTGTTTTATACTCTGGTGCTTGTGATANGTCTATAATTGTGTGGGAGAAATT
GCAAGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397886] SGN-U581742 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199212 [Download][View] Facility Assigned ID: FA0AAD22BB03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0123 Quality Trim Threshold: 14.5